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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4595002..4596252- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012798-T1 ID=KJC3_012798-T1|Name=KJC3_012798-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1251bp|location=Sequence derived from alignment at ch8:4595002..4596252- (Aspergillus niger KJC3)
GCCGTCGAAAGTGGATTGTTTTTTTTTCTACAATTGCCGATGTTAACCAC
TATTGCATCAGTTACTAGCTTGAATTCACTGACAACCCCAGATTGGACCT
CTTGATTACTTTTGCTGCTTCCTTTCCAACAATCATGAGTGCTTCAGGCC
ACGGAAGCTCAGAAACACAGACATACGGCAGCGATACATGCCATGCCTAT
GTGGATGGCGTGTCAACTTCATACGGCTATGTGCCCTCGCTCGCAGCAGC
CTCTACCTTTGTAGCTCTCTTTGGCGCTTCGATGCTAGGCCATGCTGTCC
AAATGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTTCTCACTAGGATGC
TTGGGTATCTTGACCACCGCAGAGGCTAGATCGATTATGCTGACTGGAAC
ACAGTCGAAATCCTAGGTTGGGCGGCCCGAATATGGTCTGCTAAGTGCCC
CTACGCTCAGACACCATATCTCATGCAAATCACTACCCTCATCATAGGTG
AGATATCCCATTGCTAGTACAGGGGCACATCTGACGTTCATTGATAGCAC
CAACGTTCTTCACCGCAGGAATTTACGTACTGCTAGCCCGTTTCATTCGC
ATCTTCGGCCCCCAATCATCTGTCCTTTCTCCTAAGCTCTACCTCTGGAT
CTTCTGCACCTGCGATATTATCTCTTTGGTTGTCCAGGCAGCAGGAGGAG
GTATGGCTTCATCAGGAGGAGGTGGTGGTGGTGGGGACTCGTCCTCCAGC
ACCAGCTCGTTGAGCACCAGAGAGACCTCCTCCTCCAACTCCCAATCAAC
CGGAACCCACATCATGGTCGGCGGCATCATCTTCCAGCTCGTGGCTATAA
CAGTCTTCGTTGCCCTTGGCGCTGATTTTGCCTGGCGCGTATTCTGCCGC
GAAGTACCATCCCGCCGGGGTAACACGCACATGCCGATAGTGATCGGTTT
GTTTTCGGCAATGGTGCTTTCGGTCCTCTTGATATATATTCGGAGTGTAT
ATCGGACGATTGAGTTGCTACATGGGTGGACCAGTTCAACAATGCGAAAT
GAAAAATTGTTAATTGGGTTGGATGGGGCGATGATGGTTCCGGCTGTTAT
TGTTTTCAATCTCTTTCATCCGGGGCAGTTATTGCGGAAGATTGAATTGC
GGGCGAATTCGGTGCCCATGGTGAGCGAGCAGACATTGGTCTTGGAGGAC
TTTGAGGAGGAGAGTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGGCTA
G back to topCoding sequence (CDS) from alignment at ch8:4595002..4596252- >KJC3_012798-T1 ID=KJC3_012798-T1|Name=KJC3_012798-T1|organism=Aspergillus niger KJC3|type=CDS|length=3051bp|location=Sequence derived from alignment at ch8:4595002..4596252- (Aspergillus niger KJC3)
CACCAACGTTCTTCACCGCAGGAATTTACGTACTGCTAGCCCGTTTCATT
CGCATCTTCGGCCCCCAATCATCTGTCCTTTCTCCTAAGCTCTACCTCTG
GATCTTCTGCACCTGCGATATTATCTCTTTGGTTGTCCAGGCAGCAGGAG
GAGGTATGGCTTCATCAGGAGGAGGTGGTGGTGGTGGGGACTCGTCCTCC
AGCACCAGCTCGTTGAGCACCAGAGAGACCTCCTCCTCCAACTCCCAATC
AACCGGAACCCACATCATGGTCGGCGGCATCATCTTCCAGCTCGTGGCTA
TAACAGTCTTCGTTGCCCTTGGCGCTGATTTTGCCTGGCGCGTATTCTGC
CGCGAAGTACCATCCCGCCGGGGTAACACGCACATGCCGATAGTGATCGG
TTTGTTTTCGGCAATGGTGCTTTCGGTCCTCTTGATATATATTCGGAGTG
TATATCGGACGATTGAGTTGCTACATGGGTGGACCAGTTCAACAATGCGA
AATGAAAAATTGTTAATTGGGTTGGATGGGGCGATGATGGTTCCGGCTGT
TATTGTTTTCAATCTCTTTCATCCGGGGCAGTTATTGCGGAAGATTGAAT
TGCGGGCGAATTCGGTGCCCATGGTGAGCGAGCAGACATTGGTCTTGGAG
GACTTTGAGGAGGAGAGTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGG
CTAGTCGAAATCCTAGGTTGGGCGGCCCGAATATGGTCTGCTAAGTGCCC
CTACGCTCAGACACCATATCTCATGCAAATCACTACCCTCATCATAGATG
AGTGCTTCAGGCCACGGAAGCTCAGAAACACAGACATACGGCAGCGATAC
ATGCCATGCCTATGTGGATGGCGTGTCAACTTCATACGGCTATGTGCCCT
CGCTCGCAGCAGCCTCTACCTTTGTAGCTCTCTTTGGCGCTTCGATGCTA
GGCCATGCTGTCCAAATGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTT
CTCACTAGGATGCTTGGCACCAACGTTCTTCACCGCAGGAATTTACGTAC
TGCTAGCCCGTTTCATTCGCATCTTCGGCCCCCAATCATCTGTCCTTTCT
CCTAAGCTCTACCTCTGGATCTTCTGCACCTGCGATATTATCTCTTTGGT
TGTCCAGGCAGCAGGAGGAGGTATGGCTTCATCAGGAGGAGGTGGTGGTG
GTGGGGACTCGTCCTCCAGCACCAGCTCGTTGAGCACCAGAGAGACCTCC
TCCTCCAACTCCCAATCAACCGGAACCCACATCATGGTCGGCGGCATCAT
CTTCCAGCTCGTGGCTATAACAGTCTTCGTTGCCCTTGGCGCTGATTTTG
CCTGGCGCGTATTCTGCCGCGAAGTACCATCCCGCCGGGGTAACACGCAC
ATGCCGATAGTGATCGGTTTGTTTTCGGCAATGGTGCTTTCGGTCCTCTT
GATATATATTCGGAGTGTATATCGGACGATTGAGTTGCTACATGGGTGGA
CCAGTTCAACAATGCGAAATGAAAAATTGTTAATTGGGTTGGATGGGGCG
ATGATGGTTCCGGCTGTTATTGTTTTCAATCTCTTTCATCCGGGGCAGTT
ATTGCGGAAGATTGAATTGCGGGCGAATTCGGTGCCCATGGTGAGCGAGC
AGACATTGGTCTTGGAGGACTTTGAGGAGGAGAGTCAGGGGGATAAGTTG
GTTTTGTTGGGAAGGGGCTAGTCGAAATCCTAGGTTGGGCGGCCCGAATA
TGGTCTGCTAAGTGCCCCTACGCTCAGACACCATATCTCATGCAAATCAC
TACCCTCATCATAGATGAGTGCTTCAGGCCACGGAAGCTCAGAAACACAG
ACATACGGCAGCGATACATGCCATGCCTATGTGGATGGCGTGTCAACTTC
ATACGGCTATGTGCCCTCGCTCGCAGCAGCCTCTACCTTTGTAGCTCTCT
TTGGCGCTTCGATGCTAGGCCATGCTGTCCAAATGGCGTGGTTCCGTACC
TGGTGGTGTTCCGTGTTCTCACTAGGATGCTTGGCACCAACGTTCTTCAC
CGCAGGAATTTACGTACTGCTAGCCCGTTTCATTCGCATCTTCGGCCCCC
AATCATCTGTCCTTTCTCCTAAGCTCTACCTCTGGATCTTCTGCACCTGC
GATATTATCTCTTTGGTTGTCCAGGCAGCAGGAGGAGGTATGGCTTCATC
AGGAGGAGGTGGTGGTGGTGGGGACTCGTCCTCCAGCACCAGCTCGTTGA
GCACCAGAGAGACCTCCTCCTCCAACTCCCAATCAACCGGAACCCACATC
ATGGTCGGCGGCATCATCTTCCAGCTCGTGGCTATAACAGTCTTCGTTGC
CCTTGGCGCTGATTTTGCCTGGCGCGTATTCTGCCGCGAAGTACCATCCC
GCCGGGGTAACACGCACATGCCGATAGTGATCGGTTTGTTTTCGGCAATG
GTGCTTTCGGTCCTCTTGATATATATTCGGAGTGTATATCGGACGATTGA
GTTGCTACATGGGTGGACCAGTTCAACAATGCGAAATGAAAAATTGTTAA
TTGGGTTGGATGGGGCGATGATGGTTCCGGCTGTTATTGTTTTCAATCTC
TTTCATCCGGGGCAGTTATTGCGGAAGATTGAATTGCGGGCGAATTCGGT
GCCCATGGTGAGCGAGCAGACATTGGTCTTGGAGGACTTTGAGGAGGAGA
GTCAGGGGGATAAGTTGGTTTTGTTGGGAAGGGGCTAGTCGAAATCCTAG
GTTGGGCGGCCCGAATATGGTCTGCTAAGTGCCCCTACGCTCAGACACCA
TATCTCATGCAAATCACTACCCTCATCATAGATGAGTGCTTCAGGCCACG
GAAGCTCAGAAACACAGACATACGGCAGCGATACATGCCATGCCTATGTG
GATGGCGTGTCAACTTCATACGGCTATGTGCCCTCGCTCGCAGCAGCCTC
TACCTTTGTAGCTCTCTTTGGCGCTTCGATGCTAGGCCATGCTGTCCAAA
TGGCGTGGTTCCGTACCTGGTGGTGTTCCGTGTTCTCACTAGGATGCTTG
G back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012798-T1.utr5p1 | KJC3_012798-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007568 |
| DBxref | PFAM:PF04479 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4595002..4596252 - |
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