You are here

Home

KJC3_012836-T1, KJC3_012836-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012836-T1
Unique NameKJC3_012836-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4700818..4702911+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012836-T1 ID=KJC3_012836-T1|Name=KJC3_012836-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2094bp|location=Sequence derived from alignment at ch8:4700818..4702911+ (Aspergillus niger KJC3)
GGATTGGTGGAAGAATACTATTAAATCCCAGGTCGGGCCAATTCTACCCC
GATATTCATCACGTCAGGAGACGAGAGAACCGGGATATTTCCGGCGGGAT
TGCGGGGTAAGTAAAGGGGTGGCCGCATTCTTACAGCATCCATTTTTCTT
CAGTTCTTTGAAGGATATCCTCCATTCTTTTACATATTGTAGGTGATTCA
GCATATGCATTTCACCATAAATGAGACCTGAAAGAAAGGTTGAACTTTCG
GCTTCCCCGCTAAGCTCGGACAGATGGTCTCCGACCTCCTTTGCGTTGCA
AAAGTGACCCTAGAGAATAGCTGTCCTCTGTGATCTTATTGTTTACACGA
TATAGCCATTCTTTCTCCGGTGTGCTGTGCCGCGATAGCTACATTATGGC
ATCGTCGTCGGGCTAGAAGAGAGCTGGGCTACCAGCCGCACCTGGTGGAG
ACCAGATCGGATTCCACATTACTCAATGGAGTGGAGAAGCGGACACCAAC
AGCATTCTGTTGGGGAACTGACGGATATAAGAAGGTCTCTTCTTGCCGTA
ACAGGTGATATCATACGAAGATAGGTCACCTGGTGGGAGAGAGTCTGCTT
GCCTCGGTGAGAGCACCGTGAAGCTCGCTATCTGCTGGCATCTACATTGA
TAAGATCCACCATAACTAAGCCACGACATACTATGTCATCGAACGACTAC
TTCCCGATCGGGATCGACAGTGGCCAGCTCGGAGACTGACTGCACTGTGG
ATAGAAGGGCAAGAAGTGGGCATCGCATCAAAGTTTGCACGGAAGCGCGA
CCCCTTTTGGGGCGAACCTCGGCAGCAGCTTATCGGAGCTTATCACTAAT
CGGGGCAGCCGCCCCACGGCAAGTTTTTCCGCTGCCGCCTGGCCTTTCTT
TAAGGCTTCTGGAATCCCGCCTTTTTGTCTTGGGCGATCATTCATGCATA
GACCATCATTATAGACTCTGTCGTTTTCTTTCTGTACATATACCTTCATT
TAATTGCCCCTATCTTTTAATATCGCCACATGGAGGCTATTCGCTCGTTG
GCGAGCTCCCTTTGGGAGTCCGTCACTTTCTGGAAAGCTGCTGCCGTCTT
CTTTGCTTTGCTCAACCTGAAGACTCTCCCCATCATTTGGCATGTACGTC
GCATTCGGACGCTTTGCGTACCATCATATTATTCATATCGGCTTGCTGAC
AACCCTAGGTCCGCGTTTACCGCTACTTCTTCAAGCATGGCTACCTCATT
ACCCCCGCCGTCGAACAGCCCGCCCGTCCCTGCACCGAGGTCCTCGAGCC
CGTCAGCATCTACTCTCGCGCCCCCATTATGGAACTTGATTTCAACATGC
ACAAATCCAACTCGACCTACTTCTCCGATCTCGATGTCTCCCGTACCGCT
CTCATGTCCAGCATCGTTGTGAAGGGCGCTGCGCTCCTGGAAAAGCGTCT
GCAAGAACAGGGAAAGAAGGGCTTCTTGGGCTTCATTTTGGGCAGCGTCT
ACACCACCTTCAAGAGAGAGATCCCCGCCTACACCAAGTACGAGGTCAAG
TCGCATGTGGCCAGTTTCGACCAGAAATGGATCTACATCGTCACCTACTT
CCTGAAGCCTGGCAAGGGAAAGAAGGGCCAGGACGACCCCGAGGCGCTCA
AGAAGAGACTCTACGCTGTGTCCATCAGCAAGTACGTCCTGAAGAAGGGC
CGCTACACCGTTCCTCCCAAGGATGCTTTCGAGGCTGCGGGTTACACTCC
TTTCCTCTTCGCCACCGCTGCTAATGGCCATGCTACTGGAGCTGAGAATG
GACATGCCAATGGGGATGCTGTTCAGCGTAAGGAGACTACCGGTGCTGCT
AACGGTACCTCGGATGAGTGGGAACGTCTGAAGGCCGAAATCGATCGGGG
CATGACTGTTGTGGAGCCCATTGTGGAGCAGGAGGATAGGCTCCTGGAGG
ATTATGTTCACAAGATGACCAAGCCTGGCTTTGCCTAGAGGATAGATGTG
TTTTTGTGTTTGATAAACCGTTATAGATAGAACTTATTGTACTGCAAAGG
ATAGAGCAATAGAGCAGCACTTAATATGTCATTGAAAAATTTAC
back to top

Coding sequence (CDS) from alignment at ch8:4700818..4702911+

>KJC3_012836-T1 ID=KJC3_012836-T1|Name=KJC3_012836-T1|organism=Aspergillus niger KJC3|type=CDS|length=1788bp|location=Sequence derived from alignment at ch8:4700818..4702911+ (Aspergillus niger KJC3)
ATGGAGGCTATTCGCTCGTTGGCGAGCTCCCTTTGGGAGTCCGTCACTTT
CTGGAAAGCTGCTGCCGTCTTCTTTGCTTTGCTCAACCTGAAGACTCTCC
CCATCATTTGGCATGTCCGCGTTTACCGCTACTTCTTCAAGCATGGCTAC
CTCATTACCCCCGCCGTCGAACAGCCCGCCCGTCCCTGCACCGAGGTCCT
CGAGCCCGTCAGCATCTACTCTCGCGCCCCCATTATGGAACTTGATTTCA
ACATGCACAAATCCAACTCGACCTACTTCTCCGATCTCGATGTCTCCCGT
ACCGCTCTCATGTCCAGCATCGTTGTGAAGGGCGCTGCGCTCCTGGAAAA
GCGTCTGCAAGAACAGGGAAAGAAGGGCTTCTTGGGCTTCATTTTGGGCA
GCGTCTACACCACCTTCAAGAGAGAGATCCCCGCCTACACCAAGTACGAG
GTCAAGTCGCATGTGGCCAGTTTCGACCAGAAATGGATCTACATCGTCAC
CTACTTCCTGAAGCCTGGCAAGGGAAAGAAGGGCCAGGACGACCCCGAGG
CGCTCAAGAAGAGACTCTACGCTGTGTCCATCAGCAAGTACGTCCTGAAG
AAGGGCCGCTACACCGTTCCTCCCAAGGATGCTTTCGAGGCTGCGGGTTA
CACTCCTTTCCTCTTCGCCACCGCTGCTAATGGCCATGCTACTGGAGCTG
AGAATGGACATGCCAATGGGGATGCTGTTCAGCGTAAGGAGACTACCGGT
GCTGCTAACGGTACCTCGGATGAGTGGGAACGTCTGAAGGCCGAAATCGA
TCGGGGCATGACTGTTGTGGAGCCCATTGTGGAGCAGGAGGATAGGCTCC
TGGAGGATTATGTTCACAAGATGACCAAGCCTGGCTTTGCCTAGATGGAG
GCTATTCGCTCGTTGGCGAGCTCCCTTTGGGAGTCCGTCACTTTCTGGAA
AGCTGCTGCCGTCTTCTTTGCTTTGCTCAACCTGAAGACTCTCCCCATCA
TTTGGCATGTCCGCGTTTACCGCTACTTCTTCAAGCATGGCTACCTCATT
ACCCCCGCCGTCGAACAGCCCGCCCGTCCCTGCACCGAGGTCCTCGAGCC
CGTCAGCATCTACTCTCGCGCCCCCATTATGGAACTTGATTTCAACATGC
ACAAATCCAACTCGACCTACTTCTCCGATCTCGATGTCTCCCGTACCGCT
CTCATGTCCAGCATCGTTGTGAAGGGCGCTGCGCTCCTGGAAAAGCGTCT
GCAAGAACAGGGAAAGAAGGGCTTCTTGGGCTTCATTTTGGGCAGCGTCT
ACACCACCTTCAAGAGAGAGATCCCCGCCTACACCAAGTACGAGGTCAAG
TCGCATGTGGCCAGTTTCGACCAGAAATGGATCTACATCGTCACCTACTT
CCTGAAGCCTGGCAAGGGAAAGAAGGGCCAGGACGACCCCGAGGCGCTCA
AGAAGAGACTCTACGCTGTGTCCATCAGCAAGTACGTCCTGAAGAAGGGC
CGCTACACCGTTCCTCCCAAGGATGCTTTCGAGGCTGCGGGTTACACTCC
TTTCCTCTTCGCCACCGCTGCTAATGGCCATGCTACTGGAGCTGAGAATG
GACATGCCAATGGGGATGCTGTTCAGCGTAAGGAGACTACCGGTGCTGCT
AACGGTACCTCGGATGAGTGGGAACGTCTGAAGGCCGAAATCGATCGGGG
CATGACTGTTGTGGAGCCCATTGTGGAGCAGGAGGATAGGCTCCTGGAGG
ATTATGTTCACAAGATGACCAAGCCTGGCTTTGCCTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012836KJC3_012836Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012836-T1KJC3_012836-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012836-T1.utr5p1KJC3_012836-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_012836-T1.utr5p2KJC3_012836-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012836-T1.exon1KJC3_012836-T1.exon1Aspergillus niger KJC3exon
KJC3_012836-T1.exon2KJC3_012836-T1.exon2Aspergillus niger KJC3exon
KJC3_012836-T1.exon3KJC3_012836-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012836-T1.cdsKJC3_012836-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012836-T1.utr3p1KJC3_012836-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029069
DBxrefPFAM:PF13279
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4700818..4702911 +
Powered by Drupal