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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4774813..4775752- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012858-T1 ID=KJC3_012858-T1|Name=KJC3_012858-T1|organism=Aspergillus niger KJC3|type=mRNA|length=940bp|location=Sequence derived from alignment at ch8:4774813..4775752- (Aspergillus niger KJC3)
CGAGGCAACTCCTACATTCCCTCCCAAAGAGGGAAGAGCATATTGAGAAT
GATTGCCTCAGGCAGTCTCTCACACTGCTAGCGTTGACTCGGTTGGTCTG
CATGGATCTGACTACCAACTACTACTATCTACTGGATGGGGCTGGAATAA
CTGCCTGGCAGCTCCGGTTCCGCCGCGAGTTGCACCGATTGTCCCTCCCC
CACATGCAACCACAGAGCGTACTGTGTAGACCAGCCAATGTCCCGCGCTA
TGGAGGTCGGTATCGGCACCCGTGGAAACAGCAAAAGACCGGCTGTGAGT
TGGACTCTCATCGTCTCATCCCTTAGCATGCCTTACCTCATTGACCATTG
CCGATTCATTTGATCGATTTGTTGATGATGGTGTTCTGTGTGACCAGTGC
CGGAGTCGCAAGGTGAGACACTCGTCTTAACCCCATGAACCTTAGGTGCA
TTTGCATTCTAACCGAATTTCACTCTCGTAGACTAAATGCAACCGTGTCT
CTTCCTGCTCCACCTGCATCGCTGCCAATCTAACATGTCGCATTACCCGC
CAGGCCCAAATCACGGCCGACAGCGACTCCAGTATGCCCAATGTTGATAA
TCCCAATCTAAGAGAGTTGGAGGAGGACACTACTATTCTTGGCTCATTTT
GCTGGATCTAATAGGCCATTCGTGGAAGAGGAGCTCTGTGACAGGCCTGT
TTATCCGCACTTTATGGAGGGACCGTAGATATACGCCTCATTCTAAACCT
GCCATGGATGCCCGCTGGGGAAACGCATCTTATCATACAAGTTGCCAGTT
TCTATCTTGTGTTTGCCGAGTTTCCATGTATGATCAAATACCTGGACTAA
CAACTATGGCAACCAGTCATAGAATGTCATGTACGGCTCAACGGACGATG
CCTTCGCTCCAACGTCAGACCCCAGCACAAATTTATCTGG back to topCoding sequence (CDS) from alignment at ch8:4774813..4775752- >KJC3_012858-T1 ID=KJC3_012858-T1|Name=KJC3_012858-T1|organism=Aspergillus niger KJC3|type=CDS|length=756bp|location=Sequence derived from alignment at ch8:4774813..4775752- (Aspergillus niger KJC3)
ACTAAATGCAACCGTGTCTCTTCCTGCTCCACCTGCATCGCTGCCAATCT
AACATGTCGCATTACCCGCCAGGCCCAAATCACGGCCGACAGCGACTCCA
GTATGCCCAATGTTGATAATCCCAATCTAAGAGAGTTGGAGGAGGACACT
ACTATTCTTGGCTCATTTTGCTGGATCTAATGCCGGAGTCGCAAGATGTC
CCGCGCTATGGAGGTCGGTATCGGCACCCGTGGAAACAGCAAAAGACCGG
CTACTAAATGCAACCGTGTCTCTTCCTGCTCCACCTGCATCGCTGCCAAT
CTAACATGTCGCATTACCCGCCAGGCCCAAATCACGGCCGACAGCGACTC
CAGTATGCCCAATGTTGATAATCCCAATCTAAGAGAGTTGGAGGAGGACA
CTACTATTCTTGGCTCATTTTGCTGGATCTAATGCCGGAGTCGCAAGATG
TCCCGCGCTATGGAGGTCGGTATCGGCACCCGTGGAAACAGCAAAAGACC
GGCTACTAAATGCAACCGTGTCTCTTCCTGCTCCACCTGCATCGCTGCCA
ATCTAACATGTCGCATTACCCGCCAGGCCCAAATCACGGCCGACAGCGAC
TCCAGTATGCCCAATGTTGATAATCCCAATCTAAGAGAGTTGGAGGAGGA
CACTACTATTCTTGGCTCATTTTGCTGGATCTAATGCCGGAGTCGCAAGA
TGTCCCGCGCTATGGAGGTCGGTATCGGCACCCGTGGAAACAGCAAAAGA
CCGGCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012858-T1.utr3p1 | KJC3_012858-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012858-T1.utr5p1 | KJC3_012858-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4774813..4775752 - |
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