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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4818839..4821115+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012872-T1 ID=KJC3_012872-T1|Name=KJC3_012872-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2277bp|location=Sequence derived from alignment at ch8:4818839..4821115+ (Aspergillus niger KJC3)
ATCGAAGGGGAATCGATGAGGGAAAGAGAGCTACAAAAGACCCCCAATAT
CCCCCTGAATAAAGATGGGAACTTCTTTCGAGATGTATCTTCCACTAAAA
TTGTCAAACATCTCTGTCAGTCATGACTGGCTCACTACCGTCAGTCCTGC
AGACCTTACTGGCTGATTCCCACTACTTCTCCCTGCAGAGATCCGTCTGC
CACCATAACCACCACCGCCAGCATGACATCGCCTCCATCGAATCCATGGA
TTCATGGGCCCAGTTCCGTCTCATGAAGCAGCTGCTCTGTGTCAGGCATC
CTCGCCAGTCTCTTCCATCCTCCTTACTCCGGGAGATTGATCAGGTGTTG
CTTGAGGAACGTGCCAATCGCCTTCTTCTTGACGCTGCTTCCATTCCAGC
TCTTCCAACTCCATCATCATCATCAAAGCCTCTCCCCGCCACGCTCCATC
TGTGGCAAGGAGACATTACCACGTTGGATGGCGTTACTGCCATCACCAAT
GCGGCCAACGAGCAGATGCTGGGATGTTTCCAGCCGGCCCATCGATGCCT
GGACAATGTCATCCATGCCCGGGCAGGTCCCCGCTTGCGCGAAGAATGTT
TCCACCACATGGATCAGGGACAGCGCACCTTGCCCGTCGGCCACGCATGT
GCCACCAAAGGATACTGTCTTCCTGCCCCCTATGTGATTCACACCGTAGG
CCCTCAGCTGGACGCGGGACAGCCTGTGCCCACCGCGCACCAACGTCAAC
AGCTGCGGCAATGCTATGAGGCCGTCCTGGATGTCGCAGAAGCTCTGCCT
GCATCGGATCCTCGGGGCAAGTCCATTGCTCTTTGTGGCATCTCGACCGG
ACTGTTTGCCTTTCCCGTGGAGGAGGCTGCATCCATTGCCATTCAATCCG
TTCTCGACTGGCTGCGGCACCATCTGCACACCTCCATCACCAACATCATC
TTCAACACCTTCACCGACACCGACACGGCCGTCTACCAACAGACACTCAA
AAAAATGCACTATCCAGTTCCTTCCCTAGTGCCACCTCCCCGGGTCCATG
GATCCTCCCTTATCCAAGCCAAAGCTTGGCTGGCTGCTGCCGATACCATT
TTGATCAGCTGCGGAGCCGGGATCTCGGCGGCCACTGGACTCGACTATAC
CTCGACCACTCTGTTCGATCGCCACTTCCCGGCATTCAAGCAATACCAGC
TGCGACGGCTGTATGATACCTTTGGCCGCACCAACCGTGACTGGCCATCT
GAGAGCGTCCGCTGGGGATTTTACTTCTCCCATCTGGCCATGGTGCGTCG
CTGGCCCCGCTCGTCCCTCTATACCTCGCTGCTAAAATGGCTGGCATCAC
GTTTTCAACCGGATCGGGTTCACGTGCGGACCTCCAATGCAGACGGACTC
TTTGCAGCTCATGGACTGCCCGAAGCGCAGCTCTCCACACCCCAGGGCCA
GTATGCCTTCCTTCAATGTCTGGAAAACTGCCGTCCGGATGCTGTCTTCC
CATCGGCACCGTATCTTGACGCTGCCCTGCCGCATCTGGATCCACAGACA
CAGGTCGTAACGGCGCAGGACAAAATCCCAACATGTTCATTCTGTGGTGG
CGCCATGTCGATCTGTGTTCGGGCGGGAGACTGGTTCAACGAACGACCCT
TCGCTCCCGGCGAAACGCGATGGCACCAATTCCGCGAGGCCTTTCTCACG
GATCTGACACGAAACGTAGTTATTATTGAGCTGGGTGTCGGCCTTTCCAC
GCCAGGGGTGCTGCGGTGGGAGAATGAGGAGCTGATCGAGCAGGGCGATG
GACGCGTACGGCTGGTGCGCGCGGGTTTGGGCGATGCCGTGCAGGTCCCT
GGGGAGCTGGCTGCTGCGCAGCTGGCCACCAGCATCGAAGGGGACTTGCA
GGATGTGGTTCGGGCGATAGTGGCTCCGTAGACTGGCCAAGTGACATGTA
GATGTGATACATCTAATTTGCTAAAGCGATTCTTTGCTGGACTTTGCTGT
TTCTTCCTGACATGGTCTATATATTTCTCCGGGTACGGTAGTCCATCAGC
TACACATGCGTATAACTACCAAAGCAGTTTTCTGTCCTGCGCGATGGCCT
TCCATCGAATGGAATTGTGACCATTCCGTGAAATAGCCAGGAGGATGTGA
TCCAAGTCGGGTTAGTCCCGTCGTTCTCTCCGCACCAGGCAATGTGGCTG
TCGAAGATCGGCTTTTGGCGCAAATTTCCGAGCGGCAATTATTGAAACTA
GTTCGGCGGGTCACCACCAAGTTTGGC back to topCoding sequence (CDS) from alignment at ch8:4818839..4821115+ >KJC3_012872-T1 ID=KJC3_012872-T1|Name=KJC3_012872-T1|organism=Aspergillus niger KJC3|type=CDS|length=1809bp|location=Sequence derived from alignment at ch8:4818839..4821115+ (Aspergillus niger KJC3)
ATGACTGGCTCACTACCGTCAGTCCTGCAGACCTTACTGGCTGATTCCCA
CTACTTCTCCCTGCAGAGATCCGTCTGCCACCATAACCACCACCGCCAGC
ATGACATCGCCTCCATCGAATCCATGGATTCATGGGCCCAGTTCCGTCTC
ATGAAGCAGCTGCTCTGTGTCAGGCATCCTCGCCAGTCTCTTCCATCCTC
CTTACTCCGGGAGATTGATCAGGTGTTGCTTGAGGAACGTGCCAATCGCC
TTCTTCTTGACGCTGCTTCCATTCCAGCTCTTCCAACTCCATCATCATCA
TCAAAGCCTCTCCCCGCCACGCTCCATCTGTGGCAAGGAGACATTACCAC
GTTGGATGGCGTTACTGCCATCACCAATGCGGCCAACGAGCAGATGCTGG
GATGTTTCCAGCCGGCCCATCGATGCCTGGACAATGTCATCCATGCCCGG
GCAGGTCCCCGCTTGCGCGAAGAATGTTTCCACCACATGGATCAGGGACA
GCGCACCTTGCCCGTCGGCCACGCATGTGCCACCAAAGGATACTGTCTTC
CTGCCCCCTATGTGATTCACACCGTAGGCCCTCAGCTGGACGCGGGACAG
CCTGTGCCCACCGCGCACCAACGTCAACAGCTGCGGCAATGCTATGAGGC
CGTCCTGGATGTCGCAGAAGCTCTGCCTGCATCGGATCCTCGGGGCAAGT
CCATTGCTCTTTGTGGCATCTCGACCGGACTGTTTGCCTTTCCCGTGGAG
GAGGCTGCATCCATTGCCATTCAATCCGTTCTCGACTGGCTGCGGCACCA
TCTGCACACCTCCATCACCAACATCATCTTCAACACCTTCACCGACACCG
ACACGGCCGTCTACCAACAGACACTCAAAAAAATGCACTATCCAGTTCCT
TCCCTAGTGCCACCTCCCCGGGTCCATGGATCCTCCCTTATCCAAGCCAA
AGCTTGGCTGGCTGCTGCCGATACCATTTTGATCAGCTGCGGAGCCGGGA
TCTCGGCGGCCACTGGACTCGACTATACCTCGACCACTCTGTTCGATCGC
CACTTCCCGGCATTCAAGCAATACCAGCTGCGACGGCTGTATGATACCTT
TGGCCGCACCAACCGTGACTGGCCATCTGAGAGCGTCCGCTGGGGATTTT
ACTTCTCCCATCTGGCCATGGTGCGTCGCTGGCCCCGCTCGTCCCTCTAT
ACCTCGCTGCTAAAATGGCTGGCATCACGTTTTCAACCGGATCGGGTTCA
CGTGCGGACCTCCAATGCAGACGGACTCTTTGCAGCTCATGGACTGCCCG
AAGCGCAGCTCTCCACACCCCAGGGCCAGTATGCCTTCCTTCAATGTCTG
GAAAACTGCCGTCCGGATGCTGTCTTCCCATCGGCACCGTATCTTGACGC
TGCCCTGCCGCATCTGGATCCACAGACACAGGTCGTAACGGCGCAGGACA
AAATCCCAACATGTTCATTCTGTGGTGGCGCCATGTCGATCTGTGTTCGG
GCGGGAGACTGGTTCAACGAACGACCCTTCGCTCCCGGCGAAACGCGATG
GCACCAATTCCGCGAGGCCTTTCTCACGGATCTGACACGAAACGTAGTTA
TTATTGAGCTGGGTGTCGGCCTTTCCACGCCAGGGGTGCTGCGGTGGGAG
AATGAGGAGCTGATCGAGCAGGGCGATGGACGCGTACGGCTGGTGCGCGC
GGGTTTGGGCGATGCCGTGCAGGTCCCTGGGGAGCTGGCTGCTGCGCAGC
TGGCCACCAGCATCGAAGGGGACTTGCAGGATGTGGTTCGGGCGATAGTG
GCTCCGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012872-T1.utr5p1 | KJC3_012872-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012872-T1.utr3p1 | KJC3_012872-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_8.11 |
| DBxref | InterPro:IPR029035 |
| DBxref | InterPro:IPR026590 |
| DBxref | InterPro:IPR043472 |
| DBxref | InterPro:IPR002589 |
| DBxref | PFAM:PF01661 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4818839..4821115 + |
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