You are here

Home

KJC3_012890-T1, KJC3_012890-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012890-T1
Unique NameKJC3_012890-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4855570..4858251+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012890-T1 ID=KJC3_012890-T1|Name=KJC3_012890-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2682bp|location=Sequence derived from alignment at ch8:4855570..4858251+ (Aspergillus niger KJC3)
AGTTACTAATTGGCTGCATAGGAGTTTCCCCCGTCAGCGTCAGCAATTGC
TTCTTTGCCCCCCTCATCATTACTTCTATCCAACATATAAACCTCTACCA
CCAAAACCATAGCATCCCTCCCATTGTATCTTATCATTGTCCATGGATCT
TACCACCCCCGTGGCCTGTCTAGGCTGCCGAGAAAAACATCTCAAATGCG
ACGGCAATCTGGCTGGCTGTGCTCGCTGCCAGTCCTTGGGGCTCACCTGC
CGCTTCGTCCCCTCCCGTCGTGGTCGTAAGTGTCGCCCAGCAGCAGCAGC
AGTTCCCCACGACACCGCCAGCCTGCCCACCCTTAACTCTAATTCACTAC
CGCTGGATCCCATCTCTTTCTCGACAGGTCCTTTCGGGCAGTCCCACAGC
CTGGAATACCCACAGCATGCGGGCTCCATGGATTGCGATCAAGGGCTGCA
GCTGATCTCTCTGTATTATCTCCACTTTCACCAAGCCCATCCGTTCCTGG
CCCCCATGCAACTTCTGCTCGAGTCGGAGCCGCCCGCGTTCCTGCTAGAC
ATTATAGAGTTTATCAGCCTTCATTACTTGTCCCCGCAGCTGTTTCAGGA
TAGCAGCGAGTCTCTCGGTCTGGCCGTGCAGGCTGCGGAACTGACCATCG
AAAAGGTGCAGGCCTTCCTGCTCCTTACCATTGTACATCACGGGCGACAG
CAGGCCCATGAGGCCCGCTCATGTCTGGGACAGGCCCTGCAGGGTGCACT
GGACCTGGGCTTGCACCGTCGGGAGACCTCGGACGCCATCCGTGTGGATG
CTCCCTTTCAGGCTGAGAGTCTGCGGCGCACCTGGTGGGAGATCGTCGTG
ATCGATGTGCTGCTGGCGGCTGTCCAGGTCGATGGGGTTTTGCAGTTCCA
CATGGAAGAAACACCCACCACGCCTCTTCCCGGTGATCCCAGTCAGTATC
AGGCGAGCGACGTCATCTCCGACCCCAACCCTTTCCCGTCCACTTTGGCG
GATTTGGAACAAAACGGTCTGTTCTGCGGTGATGTGGAATTCTCCCCGGG
CGCTTACCGCGTCGAGGCTGCTTTGCTGCTTCGCAATTGCCTCCGAGCCG
GTCAGACGCACGTCAGTGAGGAGGCACTAAACATATTGAACGCGGCCAAC
ATCGCCTGGTTCCATCGACTGCCACCACGCCGACGGTGCATGCTTCACCT
CAACGGCGTGCAGGATGAGCTGATGACACAGGCGATGATGTTAATGCACT
GCGCCACCATCTATTTGCACTTCCCACGCTCCTGTCTGCTCGCATTCCTG
CCCGTCACAGGCCAGATCATGTGCTCATCCCCGGCCTTGTTTGTCACCAC
GACCCTGGACCCGCAAGTGCACACCCACAGGGTTATTGAGGGGTCTGTCA
GACTATCTCAGCTAGCTGCCTTGTCCACCTCTGTCGTTAATCATACTCCT
TTCTTTGCCTGCACCCTGGTCCTCAGTTCCGTCATCCAAGTTGCCGCTAT
GTTCAGCGAGAGCCTGCATTCCTCTGGGACGAGCCAGCGACAATACCTGG
CTCTCAACCTTGGTGTTCTCAAGTCCATGGGACAAACCTGGCCCATTGCT
GCTGCTGCTACGCAACGAGTGCGTCAAGCCATGATCGAGGTCCACAACGC
GATCCCACGAGATGTTAATGCGTTGCTTGAGGAAGTTAGCCCTCCTGCTT
GACATACAGGCATACAGTAGGTCAATAGCTGTTGTTGCCAAGCATGTAAA
AAGCCGTTTGCTTCCATATCGAAGGCGGATGACCCTGTTGTCGCTGTGCG
TGCGTCTTACTGCACATGATCTGTGCTCTTGGACACTGTTCATATTCTTA
GCCTACACCAACATGAATAGAGCCCGAGCGGATGAGCAAGGCGCCATTCG
TGCTCCGTCATCACCCACAAACCGCATTGCCAAGATCTAACCGACTATCA
GCTGTACGTGCACTCATGGGGCGCAACCTCCTTCGAAATCACTCGACCCC
GCTCCCAGGGGTAAAGCCTCCCCAACGGGAACAGAACCTACATGTGAGCT
CAATTTGTGACCAAGAACCACCGGGGCGTCCGCGGAGTCTTCACGGTGAG
AAACACAGGAGTGGACGGGTATTGGCGAGGAAGGTCAAGGCGGAGCGCCC
GGTGGATGGGCGTGGAATGAAACATATGGCAGTAAATATGTAGGTCTGGG
CTTACCTTGTCAATCGAAAAGGCCTGTCCAAGGATCCTAGCGCTGCCTGC
TGAGCCAGCCAGGTTTATTGCTGGTTCTCCCGTCGCACGGACACGCAGAC
ATTCCGACGGCTTTCTGAACGGCAGTCTGTCTTTGACGAATAATAAAATG
CGAATGAAAATAATTCTGCCTAGAAGGTGAGATGATGTGATATTAGACAG
TCTCATTAATTGAAGAGCGCCACACATCCAGTAGCCCATTCATCGTCGCG
TATTCGCTAGAGACATTCGAGATCGACAGACTTTCCGTTGCCCATAAATG
ATTTCATTGGTGTCGGTAGGAGAGGGCAACGAACATTATGAAAACTATCA
GAGCATTGTGTACGAGGTTCTAGCATCCCAGACTGGTCTTTAATCTGACC
AAGCGTTTACGCGGCGGCTAAGTGTAGGGATAAAAGCCGGGCGTACGGAT
GGAACGCCATACAGCCAAACACACGTCGCGAT
back to top

Coding sequence (CDS) from alignment at ch8:4855570..4858251+

>KJC3_012890-T1 ID=KJC3_012890-T1|Name=KJC3_012890-T1|organism=Aspergillus niger KJC3|type=CDS|length=1560bp|location=Sequence derived from alignment at ch8:4855570..4858251+ (Aspergillus niger KJC3)
ATGGATCTTACCACCCCCGTGGCCTGTCTAGGCTGCCGAGAAAAACATCT
CAAATGCGACGGCAATCTGGCTGGCTGTGCTCGCTGCCAGTCCTTGGGGC
TCACCTGCCGCTTCGTCCCCTCCCGTCGTGGTCGTAAGTGTCGCCCAGCA
GCAGCAGCAGTTCCCCACGACACCGCCAGCCTGCCCACCCTTAACTCTAA
TTCACTACCGCTGGATCCCATCTCTTTCTCGACAGGTCCTTTCGGGCAGT
CCCACAGCCTGGAATACCCACAGCATGCGGGCTCCATGGATTGCGATCAA
GGGCTGCAGCTGATCTCTCTGTATTATCTCCACTTTCACCAAGCCCATCC
GTTCCTGGCCCCCATGCAACTTCTGCTCGAGTCGGAGCCGCCCGCGTTCC
TGCTAGACATTATAGAGTTTATCAGCCTTCATTACTTGTCCCCGCAGCTG
TTTCAGGATAGCAGCGAGTCTCTCGGTCTGGCCGTGCAGGCTGCGGAACT
GACCATCGAAAAGGTGCAGGCCTTCCTGCTCCTTACCATTGTACATCACG
GGCGACAGCAGGCCCATGAGGCCCGCTCATGTCTGGGACAGGCCCTGCAG
GGTGCACTGGACCTGGGCTTGCACCGTCGGGAGACCTCGGACGCCATCCG
TGTGGATGCTCCCTTTCAGGCTGAGAGTCTGCGGCGCACCTGGTGGGAGA
TCGTCGTGATCGATGTGCTGCTGGCGGCTGTCCAGGTCGATGGGGTTTTG
CAGTTCCACATGGAAGAAACACCCACCACGCCTCTTCCCGGTGATCCCAG
TCAGTATCAGGCGAGCGACGTCATCTCCGACCCCAACCCTTTCCCGTCCA
CTTTGGCGGATTTGGAACAAAACGGTCTGTTCTGCGGTGATGTGGAATTC
TCCCCGGGCGCTTACCGCGTCGAGGCTGCTTTGCTGCTTCGCAATTGCCT
CCGAGCCGGTCAGACGCACGTCAGTGAGGAGGCACTAAACATATTGAACG
CGGCCAACATCGCCTGGTTCCATCGACTGCCACCACGCCGACGGTGCATG
CTTCACCTCAACGGCGTGCAGGATGAGCTGATGACACAGGCGATGATGTT
AATGCACTGCGCCACCATCTATTTGCACTTCCCACGCTCCTGTCTGCTCG
CATTCCTGCCCGTCACAGGCCAGATCATGTGCTCATCCCCGGCCTTGTTT
GTCACCACGACCCTGGACCCGCAAGTGCACACCCACAGGGTTATTGAGGG
GTCTGTCAGACTATCTCAGCTAGCTGCCTTGTCCACCTCTGTCGTTAATC
ATACTCCTTTCTTTGCCTGCACCCTGGTCCTCAGTTCCGTCATCCAAGTT
GCCGCTATGTTCAGCGAGAGCCTGCATTCCTCTGGGACGAGCCAGCGACA
ATACCTGGCTCTCAACCTTGGTGTTCTCAAGTCCATGGGACAAACCTGGC
CCATTGCTGCTGCTGCTACGCAACGAGTGCGTCAAGCCATGATCGAGGTC
CACAACGCGATCCCACGAGATGTTAATGCGTTGCTTGAGGAAGTTAGCCC
TCCTGCTTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012890KJC3_012890Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012890-T1KJC3_012890-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012890-T1.utr5p1KJC3_012890-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012890-T1.exon1KJC3_012890-T1.exon1Aspergillus niger KJC3exon
KJC3_012890-T1.exon2KJC3_012890-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012890-T1.cdsKJC3_012890-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012890-T1.utr3p1KJC3_012890-T1.utr3p1Aspergillus niger KJC3three_prime_UTR
KJC3_012890-T1.utr3p2KJC3_012890-T1.utr3p2Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR007219
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
DBxrefPFAM:PF04082
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4855570..4858251 +
Powered by Drupal