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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4862622..4864109- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012893-T1 ID=KJC3_012893-T1|Name=KJC3_012893-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1488bp|location=Sequence derived from alignment at ch8:4862622..4864109- (Aspergillus niger KJC3)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGAAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACGGAAATTGCTAACAAGAAGATAGGT
CCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTCTAATCTGCCATCA
ACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGTGC
TACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCCAT
CAGCATCTCCCATTTCGCATCATCGACGACACCAATGA back to topCoding sequence (CDS) from alignment at ch8:4862622..4864109- >KJC3_012893-T1 ID=KJC3_012893-T1|Name=KJC3_012893-T1|organism=Aspergillus niger KJC3|type=CDS|length=4140bp|location=Sequence derived from alignment at ch8:4862622..4864109- (Aspergillus niger KJC3)
GTCCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTCTAATCTGCCAT
CAACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTTCTACCCCGGT
GCTACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGGGCGGTCTCCC
ATCAGCATCTCCCATTTCGCATCATCGACGACACCAATGAAACTGGCACG
GAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGACTCC
GACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACCTGTGGGCCAA
CGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGGGG
CCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGAAAACCTTTACCAGC
AAACAAACTATAACTGCCACCCCATGCGCGCCAGCATTCTACCGTTGACT
CTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGCCC
GCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGCAATATCATCG
ATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGCTCTACTT
GATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCCCACCCGG
TAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTCTG
CAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTCGTACCAG
ATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCGGCAATTC
CCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAATGACACCT
ACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGCAT
GGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTTTCGATACGGT
CACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTGACATCTGTGG
GAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTGGTTCCATGAC
ATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCGCA
CAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGGACCGCGA
TTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCACTACCGCAAT
CTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACAATGGGGA
TGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTCCACGGCGGTC
CGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGGATCCGTA
GGAGTTCAAGTGTCCAACCTCACATTCCGAGTCCTATGCTGCGCCAACCA
TGGCAGCTGACTTCACCTCTAATCTGCCATCAACGAGCCCTTTTACTATT
CCTCCCATGCCGACAAGTTTCTACCCCGGTGCTACTCCCATCTCAACCCT
CTTGCATCTACATGGTGCGGGCGGTCTCCCATCAGCATCTCCCATTTCGC
ATCATCGACGACACCAATGAAACTGGCACGGAGAATCCGTGAGCGCCTCA
CGCCCAGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATAT
TACCATCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTT
GGCAGTGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAG
GGAACAAAAGATTTGAAAACCTTTACCAGCAAACAAACTATAACTGCCAC
CCCATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGC
CGGGGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCA
AAGCCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGAT
GGTAAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTC
CGTGGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGG
ACATTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTG
GTTATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTG
CAATGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCT
TTGGTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGC
ATCCAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTC
GCCTTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATA
ACATCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGAC
GTATGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGA
TGAATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACA
TCTACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGC
ACCAACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGA
TGCGTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCA
TCTGGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGAC
GAGGCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCT
CACATTCCGAGTCCTATGCTGCGCCAACCATGGCAGCTGACTTCACCTCT
AATCTGCCATCAACGAGCCCTTTTACTATTCCTCCCATGCCGACAAGTTT
CTACCCCGGTGCTACTCCCATCTCAACCCTCTTGCATCTACATGGTGCGG
GCGGTCTCCCATCAGCATCTCCCATTTCGCATCATCGACGACACCAATGA
AACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCCTACA
ATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTGAACC
TGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGCCTAT
GGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGAAAAC
CTTTACCAGCAAACAAACTATAACTGCCACCCCATGCGCGCCAGCATTCT
ACCGTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCC
CCGTTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACCAGACCTGC
AATATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGATATATCGCA
GGCTCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACTGGTCTACA
TCCCACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCAAGCACGGC
CAGTCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGACACCGCGG
CTCGTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGAATTTTTCA
GCGGCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAATATCTGCAG
AATGACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTTAACAATTT
CTCGGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTACATTGTTT
TCGATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCCGCGGCGTG
ACATCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAGAACATGTG
GTTCCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCACCGTCAAGT
CTCCGGCGCACAATTATCTGATTGAGAACATCTACTGCAATCTCAGTGGT
GGGACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCCGACATCCA
CTACCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCTGAAATCCA
ACAATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATGTCATAGTC
CACGGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGAGATGATCG
AGGATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-18) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR012334 |
| DBxref | InterPro:IPR000743 |
| DBxref | PFAM:PF12708 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4862622..4864109 - |
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