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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:276379..278050- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012956-T1 ID=KJC3_012956-T1|Name=KJC3_012956-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1672bp|location=Sequence derived from alignment at JC12F:276379..278050- (Aspergillus niger KJC3) GGCTCACATTCGCGCCCGTATGATGTTGCCAGACTGATGCGGATTTTACC
CGCGTCCAACCGTCGTCCTGCTGTGGGCCTTTCGATACCTGGCCAGTGCG
TATCAACACTGGCTCCTGAATAATGCTTTGCTAGTTTTCGATCGGAGAAT
CTGAGGGTGGGCAATAGCAAGACCGATTCAATCCCCCACCCCCTCGGCCC
TCTTGAGGTATAAAGCCAGTACCTCCGTCTTGTCATCTTGCAGTTGCAGC
CGCAGCCGCTCTGTCCGTTAAAATCCAACAACTATTTTTGTCATGACAGA
TCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAA
CTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACG
CCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATCACACTATTCAA
CTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCT
GTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAAT
ATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCT
GTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGG
AGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAA
ATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGA
GCTGGCATACATTCTCCGGTCGGTGAGTGTTGCCAGCGGCCATTGTGCGA
CGGGAAGGCAATGGATACTAACCCAAGCAGACCCTTGACGGCATTAGATT
CCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGGCGGAGACAATCC
TCTTGGACCGAAGGGGCCATGTCCGCCTTGGTAATTACGTCTCTTTGATC
GTCGCTACGAACATTGTCAACTGACTTGGCGCACTAGCTGGGGTCGAGCA
GAGCTACCCGATCTCAGCATCCGATATGAATGCCGAGACGCTGAGATTGA
CCGCGCTGGCTACAATCACGAGGAGCCTGATGGCCACTGGTGCAGGACAG
GTCAGATGGAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCTGACCACCAA
GTCTTTGGATGAGTTGATGCAGGTAAGTGGGCAGCTAAGAGATGGAGCAA
TAGTTGGTAACAGAGTCCTAGGATACATTTCTCGAAGCAGCAACGGACGA
AAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAACG
ATCTTGTATTACTCTGACCGGTCTGGATTCGATGGCATCCATCATCATCT
AGACATGTTTGTAGGTGATGTTTTCACAGCAAATGTTGAGGAACCATTCA
AGCTGACAGCGTCTTTCTTGTGGTTATGCACTTCCCTTCGTGAACAGTTG
GTTGGTAACTCGTGTAAGCCATAACTGCTGCAAACTTATTCCTGTTCTCA
CAACACTACCAGACATAAATTAGGCTTGAGTTCTGCAATATTATCCCTCA
GATATTTAAGATCTACACAGAGGTTTGAGTGGTCGATACACGCTGGGTAC
TAGGGAGGCATACTCTTTGGCTATCACGGCAGCAAGTGAGATGCATCGGG
ACACCCGTATCCAGCATCTCAA back to topCoding sequence (CDS) from alignment at JC12F:276379..278050- >KJC3_012956-T1 ID=KJC3_012956-T1|Name=KJC3_012956-T1|organism=Aspergillus niger KJC3|type=CDS|length=3444bp|location=Sequence derived from alignment at JC12F:276379..278050- (Aspergillus niger KJC3) GATACATTTCTCGAAGCAGCAACGGACGAAAGAGATCTAAAGCTGTGCGT CCATGTTGTGAACAAAAAAGCCAGAAACGATCTTGTATTACTCTGACTGG GGTCGAGCAGAGCTACCCGATCTCAGCATCCGATATGAATGCCGAGACGC TGAGATTGACCGCGCTGGCTACAATCACGAGGAGCCTGATGGCCACTGGT GCAGGACAGGTCAGATGGAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCT GACCACCAAGTCTTTGGATGAGTTGATGCAGACCCTTGACGGCATTAGAT TCCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGGCGGAGACAATC CTCTTGGACCGAAGGGGCCATGTCCGCCTTGATGACAGATCTGCGCACGA AACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAACTCGGTCTGAA GAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACGCCAAAACCAAT CCCGGCCACCAACAATCGCAGTGATATCACACTATTCAACTGCTACGAAG AGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCTGTCGCAAGCAA CCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAATATTGTACACAT CCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCTGTTAGAGACGA TCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGGAGTCGTACTAC CACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAAATCACGTTGAA CTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGAGCTGGCATACA TTCTCCGGTCGGATACATTTCTCGAAGCAGCAACGGACGAAAGAGATCTA AAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAACGATCTTGTATT ACTCTGACTGGGGTCGAGCAGAGCTACCCGATCTCAGCATCCGATATGAA TGCCGAGACGCTGAGATTGACCGCGCTGGCTACAATCACGAGGAGCCTGA TGGCCACTGGTGCAGGACAGGTCAGATGGAGCTCTAAGGTCCGGGCCTTC CTCGAAGATCTGACCACCAAGTCTTTGGATGAGTTGATGCAGACCCTTGA CGGCATTAGATTCCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGG CGGAGACAATCCTCTTGGACCGAAGGGGCCATGTCCGCCTTGATGACAGA TCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAA CTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACG CCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATCACACTATTCAA CTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCT GTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAAT ATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCT GTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGG AGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAA ATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGA GCTGGCATACATTCTCCGGTCGGATACATTTCTCGAAGCAGCAACGGACG AAAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAAC GATCTTGTATTACTCTGACTGGGGTCGAGCAGAGCTACCCGATCTCAGCA TCCGATATGAATGCCGAGACGCTGAGATTGACCGCGCTGGCTACAATCAC GAGGAGCCTGATGGCCACTGGTGCAGGACAGGTCAGATGGAGCTCTAAGG TCCGGGCCTTCCTCGAAGATCTGACCACCAAGTCTTTGGATGAGTTGATG CAGACCCTTGACGGCATTAGATTCCTTCGGGATCAGGGAAGAGCATTGGC CATCCTAGAGGCGGAGACAATCCTCTTGGACCGAAGGGGCCATGTCCGCC TTGATGACAGATCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAG GGATTCATCAACTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACA CTGAAGAAACGCCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATC ACACTATTCAACTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACG AGCCAAAATCTGTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGC ACAGACAGAATATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAG GTCCAAAGCCTGTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCC ACGGCTTCTGGAGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGG AACCGATGGAAATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTC AACGAGACCGAGCTGGCATACATTCTCCGGTCGGATACATTTCTCGAAGC AGCAACGGACGAAAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAA AAGCCAGAAACGATCTTGTATTACTCTGACTGGGGTCGAGCAGAGCTACC CGATCTCAGCATCCGATATGAATGCCGAGACGCTGAGATTGACCGCGCTG GCTACAATCACGAGGAGCCTGATGGCCACTGGTGCAGGACAGGTCAGATG GAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCTGACCACCAAGTCTTTGG ATGAGTTGATGCAGACCCTTGACGGCATTAGATTCCTTCGGGATCAGGGA AGAGCATTGGCCATCCTAGAGGCGGAGACAATCCTCTTGGACCGAAGGGG CCATGTCCGCCTTGATGACAGATCTGCGCACGAAACGCCCACGGACTCTC TGGTTGGGCAGGGATTCATCAACTCGGTCTGAAGAGTCTCGATCATCGAC AGAACCGAACACTGAAGAAACGCCAAAACCAATCCCGGCCACCAACAATC GCAGTGATATCACACTATTCAACTGCTACGAAGAGAACCCGTGGAGCGTG TACGAACCACGAGCCAAAATCTGTCGCAAGCAACCAATCACCCTGGCCCA GCATCGCAAGCACAGACAGAATATTGTACACATCCGATGCCTTCCCATTG ACCGACCTCAGGTCCAAAGCCTGTTAGAGACGATCAGACGTCTTTCTCAC CCCATATTCCCACGGCTTCTGGAGTCGTACTACCACACGGGCGAGCTGCA CCTGATTTGGGAACCGATGGAAATCACGTTGAACTACATTTTAACCGCCC AGTGGCCGGTCAACGAGACCGAGCTGGCATACATTCTCCGGTCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_012956-T1.utr3p1 | KJC3_012956-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_012956-T1.utr5p1 | KJC3_012956-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR011009 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
JC12F | supercontig | JC12F:276379..278050 - |
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