You are here

Home

KJC3_012956-T1, KJC3_012956-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012956-T1
Unique NameKJC3_012956-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC12F:276379..278050-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012956-T1 ID=KJC3_012956-T1|Name=KJC3_012956-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1672bp|location=Sequence derived from alignment at JC12F:276379..278050- (Aspergillus niger KJC3)
GGCTCACATTCGCGCCCGTATGATGTTGCCAGACTGATGCGGATTTTACC
CGCGTCCAACCGTCGTCCTGCTGTGGGCCTTTCGATACCTGGCCAGTGCG
TATCAACACTGGCTCCTGAATAATGCTTTGCTAGTTTTCGATCGGAGAAT
CTGAGGGTGGGCAATAGCAAGACCGATTCAATCCCCCACCCCCTCGGCCC
TCTTGAGGTATAAAGCCAGTACCTCCGTCTTGTCATCTTGCAGTTGCAGC
CGCAGCCGCTCTGTCCGTTAAAATCCAACAACTATTTTTGTCATGACAGA
TCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAA
CTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACG
CCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATCACACTATTCAA
CTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCT
GTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAAT
ATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCT
GTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGG
AGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAA
ATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGA
GCTGGCATACATTCTCCGGTCGGTGAGTGTTGCCAGCGGCCATTGTGCGA
CGGGAAGGCAATGGATACTAACCCAAGCAGACCCTTGACGGCATTAGATT
CCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGGCGGAGACAATCC
TCTTGGACCGAAGGGGCCATGTCCGCCTTGGTAATTACGTCTCTTTGATC
GTCGCTACGAACATTGTCAACTGACTTGGCGCACTAGCTGGGGTCGAGCA
GAGCTACCCGATCTCAGCATCCGATATGAATGCCGAGACGCTGAGATTGA
CCGCGCTGGCTACAATCACGAGGAGCCTGATGGCCACTGGTGCAGGACAG
GTCAGATGGAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCTGACCACCAA
GTCTTTGGATGAGTTGATGCAGGTAAGTGGGCAGCTAAGAGATGGAGCAA
TAGTTGGTAACAGAGTCCTAGGATACATTTCTCGAAGCAGCAACGGACGA
AAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAACG
ATCTTGTATTACTCTGACCGGTCTGGATTCGATGGCATCCATCATCATCT
AGACATGTTTGTAGGTGATGTTTTCACAGCAAATGTTGAGGAACCATTCA
AGCTGACAGCGTCTTTCTTGTGGTTATGCACTTCCCTTCGTGAACAGTTG
GTTGGTAACTCGTGTAAGCCATAACTGCTGCAAACTTATTCCTGTTCTCA
CAACACTACCAGACATAAATTAGGCTTGAGTTCTGCAATATTATCCCTCA
GATATTTAAGATCTACACAGAGGTTTGAGTGGTCGATACACGCTGGGTAC
TAGGGAGGCATACTCTTTGGCTATCACGGCAGCAAGTGAGATGCATCGGG
ACACCCGTATCCAGCATCTCAA
back to top

Coding sequence (CDS) from alignment at JC12F:276379..278050-

>KJC3_012956-T1 ID=KJC3_012956-T1|Name=KJC3_012956-T1|organism=Aspergillus niger KJC3|type=CDS|length=3444bp|location=Sequence derived from alignment at JC12F:276379..278050- (Aspergillus niger KJC3)
GATACATTTCTCGAAGCAGCAACGGACGAAAGAGATCTAAAGCTGTGCGT
CCATGTTGTGAACAAAAAAGCCAGAAACGATCTTGTATTACTCTGACTGG
GGTCGAGCAGAGCTACCCGATCTCAGCATCCGATATGAATGCCGAGACGC
TGAGATTGACCGCGCTGGCTACAATCACGAGGAGCCTGATGGCCACTGGT
GCAGGACAGGTCAGATGGAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCT
GACCACCAAGTCTTTGGATGAGTTGATGCAGACCCTTGACGGCATTAGAT
TCCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGGCGGAGACAATC
CTCTTGGACCGAAGGGGCCATGTCCGCCTTGATGACAGATCTGCGCACGA
AACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAACTCGGTCTGAA
GAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACGCCAAAACCAAT
CCCGGCCACCAACAATCGCAGTGATATCACACTATTCAACTGCTACGAAG
AGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCTGTCGCAAGCAA
CCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAATATTGTACACAT
CCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCTGTTAGAGACGA
TCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGGAGTCGTACTAC
CACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAAATCACGTTGAA
CTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGAGCTGGCATACA
TTCTCCGGTCGGATACATTTCTCGAAGCAGCAACGGACGAAAGAGATCTA
AAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAACGATCTTGTATT
ACTCTGACTGGGGTCGAGCAGAGCTACCCGATCTCAGCATCCGATATGAA
TGCCGAGACGCTGAGATTGACCGCGCTGGCTACAATCACGAGGAGCCTGA
TGGCCACTGGTGCAGGACAGGTCAGATGGAGCTCTAAGGTCCGGGCCTTC
CTCGAAGATCTGACCACCAAGTCTTTGGATGAGTTGATGCAGACCCTTGA
CGGCATTAGATTCCTTCGGGATCAGGGAAGAGCATTGGCCATCCTAGAGG
CGGAGACAATCCTCTTGGACCGAAGGGGCCATGTCCGCCTTGATGACAGA
TCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAGGGATTCATCAA
CTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACACTGAAGAAACG
CCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATCACACTATTCAA
CTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACGAGCCAAAATCT
GTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGCACAGACAGAAT
ATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAGGTCCAAAGCCT
GTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCCACGGCTTCTGG
AGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGGAACCGATGGAA
ATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTCAACGAGACCGA
GCTGGCATACATTCTCCGGTCGGATACATTTCTCGAAGCAGCAACGGACG
AAAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAAAAGCCAGAAAC
GATCTTGTATTACTCTGACTGGGGTCGAGCAGAGCTACCCGATCTCAGCA
TCCGATATGAATGCCGAGACGCTGAGATTGACCGCGCTGGCTACAATCAC
GAGGAGCCTGATGGCCACTGGTGCAGGACAGGTCAGATGGAGCTCTAAGG
TCCGGGCCTTCCTCGAAGATCTGACCACCAAGTCTTTGGATGAGTTGATG
CAGACCCTTGACGGCATTAGATTCCTTCGGGATCAGGGAAGAGCATTGGC
CATCCTAGAGGCGGAGACAATCCTCTTGGACCGAAGGGGCCATGTCCGCC
TTGATGACAGATCTGCGCACGAAACGCCCACGGACTCTCTGGTTGGGCAG
GGATTCATCAACTCGGTCTGAAGAGTCTCGATCATCGACAGAACCGAACA
CTGAAGAAACGCCAAAACCAATCCCGGCCACCAACAATCGCAGTGATATC
ACACTATTCAACTGCTACGAAGAGAACCCGTGGAGCGTGTACGAACCACG
AGCCAAAATCTGTCGCAAGCAACCAATCACCCTGGCCCAGCATCGCAAGC
ACAGACAGAATATTGTACACATCCGATGCCTTCCCATTGACCGACCTCAG
GTCCAAAGCCTGTTAGAGACGATCAGACGTCTTTCTCACCCCATATTCCC
ACGGCTTCTGGAGTCGTACTACCACACGGGCGAGCTGCACCTGATTTGGG
AACCGATGGAAATCACGTTGAACTACATTTTAACCGCCCAGTGGCCGGTC
AACGAGACCGAGCTGGCATACATTCTCCGGTCGGATACATTTCTCGAAGC
AGCAACGGACGAAAGAGATCTAAAGCTGTGCGTCCATGTTGTGAACAAAA
AAGCCAGAAACGATCTTGTATTACTCTGACTGGGGTCGAGCAGAGCTACC
CGATCTCAGCATCCGATATGAATGCCGAGACGCTGAGATTGACCGCGCTG
GCTACAATCACGAGGAGCCTGATGGCCACTGGTGCAGGACAGGTCAGATG
GAGCTCTAAGGTCCGGGCCTTCCTCGAAGATCTGACCACCAAGTCTTTGG
ATGAGTTGATGCAGACCCTTGACGGCATTAGATTCCTTCGGGATCAGGGA
AGAGCATTGGCCATCCTAGAGGCGGAGACAATCCTCTTGGACCGAAGGGG
CCATGTCCGCCTTGATGACAGATCTGCGCACGAAACGCCCACGGACTCTC
TGGTTGGGCAGGGATTCATCAACTCGGTCTGAAGAGTCTCGATCATCGAC
AGAACCGAACACTGAAGAAACGCCAAAACCAATCCCGGCCACCAACAATC
GCAGTGATATCACACTATTCAACTGCTACGAAGAGAACCCGTGGAGCGTG
TACGAACCACGAGCCAAAATCTGTCGCAAGCAACCAATCACCCTGGCCCA
GCATCGCAAGCACAGACAGAATATTGTACACATCCGATGCCTTCCCATTG
ACCGACCTCAGGTCCAAAGCCTGTTAGAGACGATCAGACGTCTTTCTCAC
CCCATATTCCCACGGCTTCTGGAGTCGTACTACCACACGGGCGAGCTGCA
CCTGATTTGGGAACCGATGGAAATCACGTTGAACTACATTTTAACCGCCC
AGTGGCCGGTCAACGAGACCGAGCTGGCATACATTCTCCGGTCG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012956KJC3_012956Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012956-T1KJC3_012956-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012956-T1.cdsKJC3_012956-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012956-T1.utr3p1KJC3_012956-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012956-T1.exon4KJC3_012956-T1.exon4Aspergillus niger KJC3exon
KJC3_012956-T1.exon3KJC3_012956-T1.exon3Aspergillus niger KJC3exon
KJC3_012956-T1.exon2KJC3_012956-T1.exon2Aspergillus niger KJC3exon
KJC3_012956-T1.exon1KJC3_012956-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012956-T1.utr5p1KJC3_012956-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011009
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC12FsupercontigJC12F:276379..278050 -
Powered by Drupal