|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at JC14F:55200..57872+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012960-T1 ID=KJC3_012960-T1|Name=KJC3_012960-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2673bp|location=Sequence derived from alignment at JC14F:55200..57872+ (Aspergillus niger KJC3)
TGAATGGGAATGTTTACAATCTTCCTATCCTCAATCCCCCTTTCAGTTTC
TTACCTCAGCCCAGGTAGTTCAAGGTATGTTATGCATCACCGTCGATAAC
ACTTTGATATACTGATATCGGGAAATAGTAGCATGGCATCTACACCTGAT
CTGTTCATGCGGAGGACGCGCGGTCTTCCACGTCGGGATTATAATGCTCT
GCACAATGGCCTGATTTCTTCGCCTTCACAGCAGTCTGAGGGATCTACCT
GTGAAACAGGACACCCTTCCTCTCCTGAGCCCTCTTCGCCTAGGGACCTG
GAAAACACACCTCAATCGAAGCGGTCTTACTCTTTGCTTAGCTCCTCGCC
TTCCCCGCTTGATCCTGCCTTTTCAGAGAGCAGGAGCGATGCGAGTAGTC
CGCACCCGTGTAAAAGACGAAAGCCCAAATCATATTCTAGTTGGACTATT
GAGCACTTTTGGACTACAGATCTGGATAACACTTGGTGTCGGCAGGGTGG
CCCTCCGAAAAAAGACCGACTGCTAATTTGTAAACATTGCAATTGGTCCT
CCAGAGATTCAGCGCGCTATGGTTCCACTTCAAATTTGTTGGTGCATCTC
CAGACCAAGCATCGTATCAAGTCCGGGGACGACTCCATCTTCTTGCCCGC
GGTGGAGGGGAGTCTCGACCGGTTCTTGGAGTCCCCGAGAAAGAAGGCTG
GTGTTGAAGAGATGCTAGTTCGGTGGGTCATTCAAACAAGACAGCCTTCT
ACAGTGGTAGAGCATCCGGCTTTCAGGGCACTCATTGAAGCAACGGGAGC
CACGTTGCCCATCAAGACTGCTGATACTCTCTTCAACCGAATCAAGGAAG
ATTTCCAATCAAGTAGGGCTTCCGTGAAAGAGGAGCTTGCGAGGAGTAGC
CGGACATTGGCTTTGTCCCTTGACGTTTGGACGTCGGAAAATCAGATTCC
GATCATGGGTATCATTGGCCATTGGATCTCTCCCGAGTTTGACAAGCGCG
ATGAGCTTCTCGAGTTCACCGAAATCAATGGACCACATTCTGGAGAGAAT
CTAGCGGATGTTGTGTTGAATATGCTTGACGAACTGGACATCGCGCCAAA
GCTCCTAACCATCACAGGGGACAATGCAGGCAATAATGGGACGCTCTGCG
ATAGCCTTCACGATCAGCTCCTCAAGAAGTATGATAATGACGACGACTGC
TTTCGTATTAGGCCTCTCATGCGGTTCCGTGGACGGCAAAGCTTCATTCC
CTGCCTCGCGCATATCCTCAATCTGATCTGTAGAGATGTGCTCGCTTCCT
TAAGGGCTGGCTCGGCTCGGGAAGCAAAGGCGATACTGGACGACATGGCC
ATCCATTCTAGAGCAGCAGCATTCAACTCCCTTCACAGTACAAAAGGAGC
TATCATGAAAGTCCGGCTCCTGACGCTATGGATTGCCCGTAGCCCACAGC
GCCGCCAAGATTGGAAAGAAGTGTCACCCGGCAAACAAGTTAGTTATGAT
GTTGACACGCGATGGAATTCGACTTATATCATGATCCAGGATGCACTTCG
GCTGCAAACTCAGCTCGGACAATTTACTCGGATACATCCAGAAGTTCAGG
CTCTTCAGCTTACCGTTGACGAATGGTCGACACTTCAGCAAGTAGCTGAG
ATTCTTAAGCCGTTCTGGGATCACACAAACTCCGTCTCAAAGACTTGCCC
AACAATTGTTCAAAGTCTACCGATTTACTGGAGCTTGGACGACTTGTTGA
ATGAGGTTCGAAATGCGGAGGGGGATTTTGAAGATGTGAGCGTTGAGATT
CGCGATGCGGTGGAAGGAGGAATTCGAAAGATGAACAAATTTGCTAGAAA
AATGGACGACAACCTTCTTTACTATGTGGCTTCGGTTCTTGATCCGCGAA
TCAAGTCGTCCTTGATTGTGTCTCAGATGAGCGAACAGGATTCAGGGTTT
ATCATTTCTCAAGTGCGGGATTTCTTAAAAAAGGAGTACCCCCCAGAGCC
ATTGGTTTCCCGGGAAGTTGACCTACCACGTCCACCGGGGATGTCAGAAA
CAATGTGGAGGACTCTGCGCAAAGTCCAGCCATCCAAAGAGGCTTCTTTG
TCGGATATCGATAAGTATTTGGATTCCCCGCCGGTCAACTGGTCCCACCA
TATGATCGACGATGCAGACACAGAATGGGTCCTCAAATTGTGGAAGGCTA
ACGCGTTTAATTTTCCACTCCTGGCAAAAGCTGCTCGTGACTATCTCCCC
ATCCCTTCGGCAGAGGTCGGGATTGAACGTGAGTTTAGCAGCGCTAGAGA
TGTCTTGGGTCTTCGAAGACACTGTCTGAACGCGGAGACTATGCGATGGT
TGATGCTCTTGAGAGGGCAGTATCAGACATAATGTGAGAGCCGTGCATGA
ATGTAAAATTCATTGATGAGGTGCTCAAGTCTTGTATGTTACCTGTATGG
ACCAGACTATATGAGCTTGGTGGATAGATGTATTGGGATGTAATAAAATG
AATGGTCATGTATGGTATTTTATTATTTGAATAAATATGAATTATTCATT
TATTCATGAATAGTGCGAATATGAATAAACCCTTTATTCATATTCATATT
ATTCAATTCATATTATTCATATTCGCAAATATTCATGAATATTCACAAAT
AATCATATTCCTTTCGGAGCCCT back to topCoding sequence (CDS) from alignment at JC14F:55200..57872+ >KJC3_012960-T1 ID=KJC3_012960-T1|Name=KJC3_012960-T1|organism=Aspergillus niger KJC3|type=CDS|length=4650bp|location=Sequence derived from alignment at JC14F:55200..57872+ (Aspergillus niger KJC3)
ATGGGAATGTTTACAATCTTCCTATCCTCAATCCCCCTTTCAGTTTCTTA
CCTCAGCCCAGGTAGTTCAAGTAGCATGGCATCTACACCTGATCTGTTCA
TGCGGAGGACGCGCGGTCTTCCACGTCGGGATTATAATGCTCTGCACAAT
GGCCTGATTTCTTCGCCTTCACAGCAGTCTGAGGGATCTACCTGTGAAAC
AGGACACCCTTCCTCTCCTGAGCCCTCTTCGCCTAGGGACCTGGAAAACA
CACCTCAATCGAAGCGGTCTTACTCTTTGCTTAGCTCCTCGCCTTCCCCG
CTTGATCCTGCCTTTTCAGAGAGCAGGAGCGATGCGAGTAGTCCGCACCC
GTGTAAAAGACGAAAGCCCAAATCATATTCTAGTTGGACTATTGAGCACT
TTTGGACTACAGATCTGGATAACACTTGGTGTCGGCAGGGTGGCCCTCCG
AAAAAAGACCGACTGCTAATTTGTAAACATTGCAATTGGTCCTCCAGAGA
TTCAGCGCGCTATGGTTCCACTTCAAATTTGTTGGTGCATCTCCAGACCA
AGCATCGTATCAAGTCCGGGGACGACTCCATCTTCTTGCCCGCGGTGGAG
GGGAGTCTCGACCGGTTCTTGGAGTCCCCGAGAAAGAAGGCTGGTGTTGA
AGAGATGCTAGTTCGGTGGGTCATTCAAACAAGACAGCCTTCTACAGTGG
TAGAGCATCCGGCTTTCAGGGCACTCATTGAAGCAACGGGAGCCACGTTG
CCCATCAAGACTGCTGATACTCTCTTCAACCGAATCAAGGAAGATTTCCA
ATCAAGTAGGGCTTCCGTGAAAGAGGAGCTTGCGAGGAGTAGCCGGACAT
TGGCTTTGTCCCTTGACGTTTGGACGTCGGAAAATCAGATTCCGATCATG
GGTATCATTGGCCATTGGATCTCTCCCGAGTTTGACAAGCGCGATGAGCT
TCTCGAGTTCACCGAAATCAATGGACCACATTCTGGAGAGAATCTAGCGG
ATGTTGTGTTGAATATGCTTGACGAACTGGACATCGCGCCAAAGCTCCTA
ACCATCACAGGGGACAATGCAGGCAATAATGGGACGCTCTGCGATAGCCT
TCACGATCAGCTCCTCAAGAAGTATGATAATGACGACGACTGCTTTCGTA
TTAGGCCTCTCATGCGGTTCCGTGGACGGCAAAGCTTCATTCCCTGCCTC
GCGCATATCCTCAATCTGATCTGTAGAGATGTGCTCGCTTCCTTAAGGGC
TGGCTCGGCTCGGGAAGCAAAGGCGATACTGGACGACATGGCCATCCATT
CTAGAGCAGCAGCATTCAACTCCCTTCACAGTACAAAAGGAGCTATCATG
AAAGTCCGGCTCCTGACGCTATGGATTGCCCGTAGCCCACAGCGCCGCCA
AGATTGGAAAGAAGTGTCACCCGGCAAACAAGTTAGTTATGATGTTGACA
CGCGATGGAATTCGACTTATATCATGATCCAGGATGCACTTCGGCTGCAA
ACTCAGCTCGGACAATTTACTCGGATACATCCAGAAGTTCAGGCTCTTCA
GCTTACCGTTGACGAATGGTCGACACTTCAGCAAGTAGCTGAGATTCTTA
AGCCGTTCTGGGATCACACAAACTCCGTCTCAAAGACTTGCCCAACAATT
GTTCAAAGTCTACCGATTTACTGGAGCTTGGACGACTTGTTGAATGAGGT
TCGAAATGCGGAGGGGGATTTTGAAGATGTGAGCGTTGAGATTCGCGATG
CGGTGGAAGGAGGAATTCGAAAGATGAACAAATTTGCTAGAAAAATGGAC
GACAACCTTCTTTACTATGTGGCTTCGGTTCTTGATCCGCGAATCAAGTC
GTCCTTGATTGTGTCTCAGATGAGCGAACAGGATTCAGGGTTTATCATTT
CTCAAGTGCGGGATTTCTTAAAAAAGGAGTACCCCCCAGAGCCATTGGTT
TCCCGGGAAGTTGACCTACCACGTCCACCGGGGATGTCAGAAACAATGTG
GAGGACTCTGCGCAAAGTCCAGCCATCCAAAGAGGCTTCTTTGTCGGATA
TCGATAAGTATTTGGATTCCCCGCCGGTCAACTGGTCCCACCATATGATC
GACGATGCAGACACAGAATGGGTCCTCAAATTGTGGAAGGCTAACGCGTT
TAATTTTCCACTCCTGGCAAAAGCTGCTCGTGACTATCTCCCCATCCCTT
CGGCAGAGGTCGGGATTGAACGTGAGTTTAGCAGCGCTAGAGATGTCTTG
GGTCTTCGAAGACACTGTCTGAACGCGGAGACTATGCGATGGTTGATGCT
CTTGAGAGGGCAGTATCAGACATAAATGGGAATGTTTACAATCTTCCTAT
CCTCAATCCCCCTTTCAGTTTCTTACCTCAGCCCAGGTAGTTCAAGTAGC
ATGGCATCTACACCTGATCTGTTCATGCGGAGGACGCGCGGTCTTCCACG
TCGGGATTATAATGCTCTGCACAATGGCCTGATTTCTTCGCCTTCACAGC
AGTCTGAGGGATCTACCTGTGAAACAGGACACCCTTCCTCTCCTGAGCCC
TCTTCGCCTAGGGACCTGGAAAACACACCTCAATCGAAGCGGTCTTACTC
TTTGCTTAGCTCCTCGCCTTCCCCGCTTGATCCTGCCTTTTCAGAGAGCA
GGAGCGATGCGAGTAGTCCGCACCCGTGTAAAAGACGAAAGCCCAAATCA
TATTCTAGTTGGACTATTGAGCACTTTTGGACTACAGATCTGGATAACAC
TTGGTGTCGGCAGGGTGGCCCTCCGAAAAAAGACCGACTGCTAATTTGTA
AACATTGCAATTGGTCCTCCAGAGATTCAGCGCGCTATGGTTCCACTTCA
AATTTGTTGGTGCATCTCCAGACCAAGCATCGTATCAAGTCCGGGGACGA
CTCCATCTTCTTGCCCGCGGTGGAGGGGAGTCTCGACCGGTTCTTGGAGT
CCCCGAGAAAGAAGGCTGGTGTTGAAGAGATGCTAGTTCGGTGGGTCATT
CAAACAAGACAGCCTTCTACAGTGGTAGAGCATCCGGCTTTCAGGGCACT
CATTGAAGCAACGGGAGCCACGTTGCCCATCAAGACTGCTGATACTCTCT
TCAACCGAATCAAGGAAGATTTCCAATCAAGTAGGGCTTCCGTGAAAGAG
GAGCTTGCGAGGAGTAGCCGGACATTGGCTTTGTCCCTTGACGTTTGGAC
GTCGGAAAATCAGATTCCGATCATGGGTATCATTGGCCATTGGATCTCTC
CCGAGTTTGACAAGCGCGATGAGCTTCTCGAGTTCACCGAAATCAATGGA
CCACATTCTGGAGAGAATCTAGCGGATGTTGTGTTGAATATGCTTGACGA
ACTGGACATCGCGCCAAAGCTCCTAACCATCACAGGGGACAATGCAGGCA
ATAATGGGACGCTCTGCGATAGCCTTCACGATCAGCTCCTCAAGAAGTAT
GATAATGACGACGACTGCTTTCGTATTAGGCCTCTCATGCGGTTCCGTGG
ACGGCAAAGCTTCATTCCCTGCCTCGCGCATATCCTCAATCTGATCTGTA
GAGATGTGCTCGCTTCCTTAAGGGCTGGCTCGGCTCGGGAAGCAAAGGCG
ATACTGGACGACATGGCCATCCATTCTAGAGCAGCAGCATTCAACTCCCT
TCACAGTACAAAAGGAGCTATCATGAAAGTCCGGCTCCTGACGCTATGGA
TTGCCCGTAGCCCACAGCGCCGCCAAGATTGGAAAGAAGTGTCACCCGGC
AAACAAGTTAGTTATGATGTTGACACGCGATGGAATTCGACTTATATCAT
GATCCAGGATGCACTTCGGCTGCAAACTCAGCTCGGACAATTTACTCGGA
TACATCCAGAAGTTCAGGCTCTTCAGCTTACCGTTGACGAATGGTCGACA
CTTCAGCAAGTAGCTGAGATTCTTAAGCCGTTCTGGGATCACACAAACTC
CGTCTCAAAGACTTGCCCAACAATTGTTCAAAGTCTACCGATTTACTGGA
GCTTGGACGACTTGTTGAATGAGGTTCGAAATGCGGAGGGGGATTTTGAA
GATGTGAGCGTTGAGATTCGCGATGCGGTGGAAGGAGGAATTCGAAAGAT
GAACAAATTTGCTAGAAAAATGGACGACAACCTTCTTTACTATGTGGCTT
CGGTTCTTGATCCGCGAATCAAGTCGTCCTTGATTGTGTCTCAGATGAGC
GAACAGGATTCAGGGTTTATCATTTCTCAAGTGCGGGATTTCTTAAAAAA
GGAGTACCCCCCAGAGCCATTGGTTTCCCGGGAAGTTGACCTACCACGTC
CACCGGGGATGTCAGAAACAATGTGGAGGACTCTGCGCAAAGTCCAGCCA
TCCAAAGAGGCTTCTTTGTCGGATATCGATAAGTATTTGGATTCCCCGCC
GGTCAACTGGTCCCACCATATGATCGACGATGCAGACACAGAATGGGTCC
TCAAATTGTGGAAGGCTAACGCGTTTAATTTTCCACTCCTGGCAAAAGCT
GCTCGTGACTATCTCCCCATCCCTTCGGCAGAGGTCGGGATTGAACGTGA
GTTTAGCAGCGCTAGAGATGTCTTGGGTCTTCGAAGACACTGTCTGAACG
CGGAGACTATGCGATGGTTGATGCTCTTGAGAGGGCAGTATCAGACATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012960-T1.utr5p1 | KJC3_012960-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012960-T1.utr3p1 | KJC3_012960-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-16) |
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR003656 |
| DBxref | InterPro:IPR008906 |
| DBxref | PFAM:PF02892 |
| DBxref | PFAM:PF05699 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC14F | supercontig | JC14F:55200..57872 + |
|
