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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC14F:119046..120136- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012961-T1 ID=KJC3_012961-T1|Name=KJC3_012961-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1091bp|location=Sequence derived from alignment at JC14F:119046..120136- (Aspergillus niger KJC3)
TACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTA
CTACAACCAACAATCCCTATGGAATTCCAATACTGGGGTCAACCCAGCAG
AATTTATGATCAATATTGTCTCAGGCCATCTTTTTCCTGGTGTTGAATGG
CATCACATGTGGCTAGAATCACCCCCAGCATAGATACATGAGTGGTCATC
TAGACACACTCATTTCTGATGCAGCTGCTAAACCCGCCGGCCAGAAACGA
GCGAGAACAGTCACTATTCTCAGCGACAGCATGTCAGCACTGCTGGCTAT
TCAGAAACCCGGCAGTAAATCAGGCCAACAAATTATCTATGCGACCCTTC
AAGCAGCCAAGAATACGAGAACACACGGGGTTACAATTCGATTGCAGTGG
GTTCCCGGACACAGCGAGATCCTCGGTAACGACACAGCCGATCGGCTGGC
CAAAGAAGCAGCCATACCTGGCAAGACACACCCGTTTTCTCCCCTGCTCT
CGCGTGAAAGAGCATACATCAGGCAAGGAATCTTTACTCAATGGGAGAAA
GAATGGAAAGAGTCCAGGGACGGCGGCCATCTCCGGAAAATCGACAACAC
ACTGCCAGCAAAATACACCAGACGACTCTACGGAGCTCTGCCAAGAAATC
GAGCATACCTTCTGACCCAGATACGGTTGGGACATTGCTGGCTGTCCACG
TACGGAAAGTTGTTCGGCTTCCGCGATGATGACCGGTGCCTCTGCGGTGA
ACGGGAAAGTATAATACACGTCCTTCTAGATTGCCCGCTGCTCAGAGACT
TACGTCGACAGCTCCGGGAAAAGGTCGGTGATGCGCTCAATAACATGTCA
GTCCTGCTGGGCATATCTTGTCAGGAGGGTGGAAGTAGAGTCAGCAACGC
TTCGCGCACTAAGACAGTCGAGGCCGTCTTGGATTTTGCAGAAGCATCCC
AGCGATTTCGAAGCCGCGTGCCATAAGGGCAGCTGACTAACATCAACGGC
GCAAAGGCCACAATAGGCCCCGACGAGGCTCTAAGTTCGTTTAAGAAGTG
GTACAGGATCAATGTTTATTAAAGAGATACATATAGTGGTA back to topCoding sequence (CDS) from alignment at JC14F:119046..120136- >KJC3_012961-T1 ID=KJC3_012961-T1|Name=KJC3_012961-T1|organism=Aspergillus niger KJC3|type=CDS|length=1182bp|location=Sequence derived from alignment at JC14F:119046..120136- (Aspergillus niger KJC3)
CTCCGGGAAAAGGTCGGTGAATGAGTGGTCATCTAGACACACTCATTTCT
GATGCAGCTGCTAAACCCGCCGGCCAGAAACGAGCGAGAACAGTCACTAT
TCTCAGCGACAGCATGTCAGCACTGCTGGCTATTCAGAAACCCGGCAGTA
AATCAGGCCAACAAATTATCTATGCGACCCTTCAAGCAGCCAAGAATACG
AGAACACACGGGGTTACAATTCGATTGCAGTGGGTTCCCGGACACAGCGA
GATCCTCGGTAACGACACAGCCGATCGGCTGGCCAAAGAAGCAGCCATAC
CTGGCAAGACACACCCGTTTTCTCCCCTGCTCTCGCGTGAAAGAGCATAC
ATCAGGCAAGGAATCTTTACTCAATGGGAGAAAGAATGGAAAGAGTCCAG
GGACGGCGGCCATCTCCGGAAAATCGACAACACACTGCCAGCAAAATACA
CCAGACGACTCTACGGAGCTCTGCCAAGAAATCGAGCATACCTTCTGACC
CAGATACGGTTGGGACATTGCTGGCTGTCCACGTACGGAAAGTTGTTCGG
CTTCCGCGATGATGACCGGTGCCTCTGCGGTGAACGGGAAACTCCGGGAA
AAGGTCGGTGAATGAGTGGTCATCTAGACACACTCATTTCTGATGCAGCT
GCTAAACCCGCCGGCCAGAAACGAGCGAGAACAGTCACTATTCTCAGCGA
CAGCATGTCAGCACTGCTGGCTATTCAGAAACCCGGCAGTAAATCAGGCC
AACAAATTATCTATGCGACCCTTCAAGCAGCCAAGAATACGAGAACACAC
GGGGTTACAATTCGATTGCAGTGGGTTCCCGGACACAGCGAGATCCTCGG
TAACGACACAGCCGATCGGCTGGCCAAAGAAGCAGCCATACCTGGCAAGA
CACACCCGTTTTCTCCCCTGCTCTCGCGTGAAAGAGCATACATCAGGCAA
GGAATCTTTACTCAATGGGAGAAAGAATGGAAAGAGTCCAGGGACGGCGG
CCATCTCCGGAAAATCGACAACACACTGCCAGCAAAATACACCAGACGAC
TCTACGGAGCTCTGCCAAGAAATCGAGCATACCTTCTGACCCAGATACGG
TTGGGACATTGCTGGCTGTCCACGTACGGAAAGTTGTTCGGCTTCCGCGA
TGATGACCGGTGCCTCTGCGGTGAACGGGAAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004523 | RNA-DNA hybrid ribonuclease activity |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012961-T1.utr3p1 | KJC3_012961-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012961-T1.utr5p1 | KJC3_012961-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR036397 |
| DBxref | InterPro:IPR002156 |
| DBxref | PFAM:PF00075 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC14F | supercontig | JC14F:119046..120136 - |
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