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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC14F:287682..288532+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012968-T1 ID=KJC3_012968-T1|Name=KJC3_012968-T1|organism=Aspergillus niger KJC3|type=mRNA|length=851bp|location=Sequence derived from alignment at JC14F:287682..288532+ (Aspergillus niger KJC3)
GTCAGAAGCCAATCCCTTTCTGCTCCACCATACCATGACATAATACTCGA
CTCCCATACATAATCAACAGTATAACTTTCATTCTTCTCCGTCCTTGCCA
ATACTGACCCTCCACTCAGTCTCTCCATTGTAATGAACCTACCTCTTGAA
CCTCGAAGTTCTTCAACTTCGTGTTCTACAAGTACCATGCAACACCTAAG
AAGTGCGACTACGGCAATATTCACTTCTGGGAAGTCCTTTGCTCGAGAGC
ATACAGCCGCACTAGCCTTTGGTAGTACGGGACTTGCCCTCGCTACGGCA
CCTATCGCTGGCCCCGCAATATTAGGTGCTGCCGGTTTTGGCGCTACAGG
GCCTGTTGTGGCTTCACTTGCTGCAGTATGGCAATCTTCAATCGGAGCAG
TTCAAGCTGGGAGTCTGTTTGCCACATTACAAAGTGCCGCGATGGGAGGT
GCTGCTGCGGGAGGATTCACAACAGCATCGAATATTGGTATCGCGATGGT
GGGATCCGCGGCGATCGGAACACAGTGGACTTATAGCAAAGGAGTACCAC
GGATGAGGCATGATGTCAAAAGTACTGATAAAGCTGGATACTGTGGTACT
ATAGCTCTTTCTCCCTGAACGCTTCTCAAGGCTAACTCAGATATAGATAG
CGATCAGCCAGATGATGAATTTGACCACAAGGCAAGCAATCCACGGCCTT
GTGATAAAAATGATAGTTTGGTAAAGGAATGGGCAAAATTGCTTCAAATA
GACCCATCTTGATTGGATATTCCCAACGTCGTACACCAGAGCAACGTGCA
AGAGGAAACCCGTTCAGATATTTATCATAGCCATATCTACAGATGTTTCG
C back to topCoding sequence (CDS) from alignment at JC14F:287682..288532+ >KJC3_012968-T1 ID=KJC3_012968-T1|Name=KJC3_012968-T1|organism=Aspergillus niger KJC3|type=CDS|length=1158bp|location=Sequence derived from alignment at JC14F:287682..288532+ (Aspergillus niger KJC3)
ATGAACCTACCTCTTGAACCTCGAAGTTCTTCAACTTCGTGTTCTACAAG
TACCATGCAACACCTAAGAAGTGCGACTACGGCAATATTCACTTCTGGGA
AGTCCTTTGCTCGAGAGCATACAGCCGCACTAGCCTTTGGTAGTACGGGA
CTTGCCCTCGCTACGGCACCTATCGCTGGCCCCGCAATATTAGGTGCTGC
CGGTTTTGGCGCTACAGGGCCTGTTGTGGCTTCACTTGCTGCAGTATGGC
AATCTTCAATCGGAGCAGTTCAAGCTGGGAGTCTGTTTGCCACATTACAA
AGTGCCGCGATGGGAGGTGCTGCTGCGGGAGGATTCACAACAGCATCGAA
TATTGGTATCGCGATGGTGGGATCCGCGGCGATCGGAACACAGTGGACTT
ATAGCAAAGGAGTACCACGGATGAGGCATGATGTCAAAAGTACTGATAAA
GCTGGATACTGTGATAGCGATCAGCCAGATGATGAATTTGACCACAAGGC
AAGCAATCCACGGCCTTGTGATAAAAATGATAGTTTGGTAAAGGAATGGG
CAAAATTGCTTCAAATAGACCCATCTTGAATGAACCTACCTCTTGAACCT
CGAAGTTCTTCAACTTCGTGTTCTACAAGTACCATGCAACACCTAAGAAG
TGCGACTACGGCAATATTCACTTCTGGGAAGTCCTTTGCTCGAGAGCATA
CAGCCGCACTAGCCTTTGGTAGTACGGGACTTGCCCTCGCTACGGCACCT
ATCGCTGGCCCCGCAATATTAGGTGCTGCCGGTTTTGGCGCTACAGGGCC
TGTTGTGGCTTCACTTGCTGCAGTATGGCAATCTTCAATCGGAGCAGTTC
AAGCTGGGAGTCTGTTTGCCACATTACAAAGTGCCGCGATGGGAGGTGCT
GCTGCGGGAGGATTCACAACAGCATCGAATATTGGTATCGCGATGGTGGG
ATCCGCGGCGATCGGAACACAGTGGACTTATAGCAAAGGAGTACCACGGA
TGAGGCATGATGTCAAAAGTACTGATAAAGCTGGATACTGTGATAGCGAT
CAGCCAGATGATGAATTTGACCACAAGGCAAGCAATCCACGGCCTTGTGA
TAAAAATGATAGTTTGGTAAAGGAATGGGCAAAATTGCTTCAAATAGACC
CATCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012968-T1.utr5p1 | KJC3_012968-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012968-T1.utr3p1 | KJC3_012968-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009311 |
| DBxref | PFAM:PF06140 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC14F | supercontig | JC14F:287682..288532 + |
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