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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC18F:5752..7542+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012987-T1 ID=KJC3_012987-T1|Name=KJC3_012987-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1791bp|location=Sequence derived from alignment at JC18F:5752..7542+ (Aspergillus niger KJC3)
GTCTATTGGGCTTCCGTGCAGTTCGGAACCATGATTGGCACCATCATGCC
CGGAGATGCCGAGTACTGGATCATGGGCACCTATCTACCGTGTGGCATTG
CCCTGTTCCACGCGTCGAACAGTCGCTTCTACCACGTGGCAAAGCTTCAG
GAGGACTATGTCATTCGTAGTTGTGGCGGGATTGATTTATCCTCCACCTC
GAGGGGCAAGCTCGGTGCCGTAGACCGGTTTCGTCGCCTTGCATACACTA
CCAAGATCCTTGTGCTTGTTACGGTGGCGTCGCTCGTTCAGGTAAAACGG
CCACCGCCTACCCCTACTGATTATCGTATCAGTGTTTAATTGAATCATTA
GGTGTTCCTCACGGTCTTGATGTGGCTCATCTCTCGCAAATGGCACAGCA
CTTGGGGGATTCCAGGCACCGAGGTCCATGGAACCGAGATGCAGCAAAAG
TCGGAAATGGGCCGGGGCTGGGAGTGGTAAGAAGGCCTCCGACATACGCC
CGGCGCATATACGACGAGAAGTGCGTGCTAACCGATATGCAGGTGGCCTG
GCGTGTTCGGACAGTTCTTCTGGTCCTGGATTGTGGGCCCCGTCGTTCTC
TGGAAATCCCGTCACATCCACGACACCCACGGCTGGCGAGTCCAGACAAT
GGGCTGCGTCATCGCCAAGTGAGTCAATCGGTCTGATGAGGTCTGTCGTA
CGACTAACCCGTCCTGTAGTCTCCCGGCGACGCCGATGTGGCTCATCGCC
CTCTATGTCCCCGCCATGGAGCGAGTCAATCAGTACTGGCTACCGCCCCA
GTGGTAGGTGCTCCGAGCCGTGACCAACAGGAACATAGAAATAAAGATGG
AAAGAAGCACGAAAATGTGGCTGACACCTGTAGGATTTGTCTCTCTATCT
GGGTGATGGAGGTTTTTGCTGTTCTCCTGCCGTGCCGGGAGGTAATGCGC
TATCACGCTATCCGACAAGGGGCCTTCGATTCGATCGCACGGTGGGAACC
AAATACCAATCTCTTTGCCGGTAGCACCATGGCCCGCAGGTCCGCCTCCA
TTCTCGTCGAGCTCACAGGGTCTGGCCGGCAATCATGGAGTAGATCTCTT
GGCTCCAGCTCCAGCTCTCGGGACAGCATATTCACCAAGCGTGCGCTTGA
ATGTGTCTTGGCGCGCAATCCCGCCCCGCTGCAGGATTTTTCCGCCCATC
GCGACTTTTCCGGAGAGAATATAGCTTTTCTGACCCGAGTGGCAGAATGG
AAGACCTCGCTGCCCCATGCGGTCTGGGATAGCAGGATCTCAGACTATGG
AGACCTTACTGACTTGATTCGGGAGCAGTTTCACCGCGCGCTGTGTATTT
ACACGACGTTCATCAGTGATCGCCATGCGCACTTTCCGATCAACATCTCT
TCGCAGGACCGGAAGGAGCTGGAGAAGGTCTTCGCGGGCCCTGCTGGGCT
TCTCTTCGGGGACGGGCGCCCGGCCAATCCCGCCGTTCCCTTCGATGCGC
CAGGGTATGCCCCCACGCCCTTAGCGTCTCCGATCGCCTCCATGAAGGCC
GAAGCTGGTTCTCTAGTCGCCGACAACGGCCCGGTGCAATCCTGGGGCGA
GATTCCCCAGACATTCAGTGCGACAGTCTTTGACCGAGCCGAGGAGAGCA
TCAAGTACCTCGTCCTGACCAACACGTGGCCTAAGTTTGTTCGAAGTTGC
GGCATCGCAGCTGAGGTTGATTTGCTGGCAGGGAGCTAGGGTCCCGCGTA
GCTGGTTCCGGAACGAGGTCGCCAGCGATGGAAGATTGGAC back to topCoding sequence (CDS) from alignment at JC18F:5752..7542+ >KJC3_012987-T1 ID=KJC3_012987-T1|Name=KJC3_012987-T1|organism=Aspergillus niger KJC3|type=CDS|length=3699bp|location=Sequence derived from alignment at JC18F:5752..7542+ (Aspergillus niger KJC3)
ATGGCACAGCACTTGGGGGATTCCAGGCACCGAGGTCCATGGAACCGAGA
TGCAGCAAAAGTCGGAAATGGGCCGGGGCTGGGAGTGGTGGCCTGGCGTG
TTCGGACAGTTCTTCTGGTCCTGGATTGTGGGCCCCGTCGTTCTCTGGAA
ATCCCGTCACATCCACGACACCCACGGCTGGCGAGTCCAGACAATGGGCT
GCGTCATCGCCAATCTCCCGGCGACGCCGATGTGGCTCATCGCCCTCTAT
GTCCCCGCCATGGAGCGAGTCAATCAGTACTGGCTACCGCCCCAGTGGTA
GGTGCTCCGAGCCGTGACCAACAGGAACATAGAAATAAAGATGGAAAGAA
GCACGAAAATGTGGCTGACACCTGTAGGATTTGTCTCTCTATCTGGGTGA
TGGAGGTTTTTGCTGTTCTCCTGCCGTGCCGGGAGGTAATGCGCTATCAC
GCTATCCGACAAGGGGCCTTCGATTCGATCGCACGGTGGGAACCAAATAC
CAATCTCTTTGCCGGTAGCACCATGGCCCGCAGGTCCGCCTCCATTCTCG
TCGAGCTCACAGGGTCTGGCCGGCAATCATGGAGTAGATCTCTTGGCTCC
AGCTCCAGCTCTCGGGACAGCATATTCACCAAGCGTGCGCTTGAATGTGT
CTTGGCGCGCAATCCCGCCCCGCTGCAGGATTTTTCCGCCCATCGCGACT
TTTCCGGAGAGAATATAGCTTTTCTGACCCGAGTGGCAGAATGGAAGACC
TCGCTGCCCCATGCGGTCTGGGATAGCAGGATCTCAGACTATGGAGACCT
TACTGACTTGATTCGGGAGCAGTTTCACCGCGCGCTGTGTATTTACACGA
CGTTCATCAGTGATCGCCATGCGCACTTTCCGATCAACATCTCTTCGCAG
GACCGGAAGGAGCTGGAGAAGGTCTTCGCGGGCCCTGCTGGGCTTCTCTT
CGGGGACGGGCGCCCGGCCAATCCCGCCGTTCCCTTCGATGCGCCAGGGT
ATGCCCCCACGCCCTTAGCGTCTCCGATCGCCTCCATGAAGGCCGAAGCT
GGTTCTCTAGTCGCCGACAACGGCCCGGTGCAATCCTGGGGCGAGATTCC
CCAGACATTCAGTGCGACAGTCTTTGACCGAGCCGAGGAGAGCATCAAGT
ACCTCGTCCTGACCAACACGTGGCCTAAGTTTGTTCGAAGTTGCGGCATC
GCAGCTGAGGTTGATTTGCTGGCAGGGAGCTAGATGGCACAGCACTTGGG
GGATTCCAGGCACCGAGGTCCATGGAACCGAGATGCAGCAAAAGTCGGAA
ATGGGCCGGGGCTGGGAGTGGTGGCCTGGCGTGTTCGGACAGTTCTTCTG
GTCCTGGATTGTGGGCCCCGTCGTTCTCTGGAAATCCCGTCACATCCACG
ACACCCACGGCTGGCGAGTCCAGACAATGGGCTGCGTCATCGCCAATCTC
CCGGCGACGCCGATGTGGCTCATCGCCCTCTATGTCCCCGCCATGGAGCG
AGTCAATCAGTACTGGCTACCGCCCCAGTGGTAGGTGCTCCGAGCCGTGA
CCAACAGGAACATAGAAATAAAGATGGAAAGAAGCACGAAAATGTGGCTG
ACACCTGTAGGATTTGTCTCTCTATCTGGGTGATGGAGGTTTTTGCTGTT
CTCCTGCCGTGCCGGGAGGTAATGCGCTATCACGCTATCCGACAAGGGGC
CTTCGATTCGATCGCACGGTGGGAACCAAATACCAATCTCTTTGCCGGTA
GCACCATGGCCCGCAGGTCCGCCTCCATTCTCGTCGAGCTCACAGGGTCT
GGCCGGCAATCATGGAGTAGATCTCTTGGCTCCAGCTCCAGCTCTCGGGA
CAGCATATTCACCAAGCGTGCGCTTGAATGTGTCTTGGCGCGCAATCCCG
CCCCGCTGCAGGATTTTTCCGCCCATCGCGACTTTTCCGGAGAGAATATA
GCTTTTCTGACCCGAGTGGCAGAATGGAAGACCTCGCTGCCCCATGCGGT
CTGGGATAGCAGGATCTCAGACTATGGAGACCTTACTGACTTGATTCGGG
AGCAGTTTCACCGCGCGCTGTGTATTTACACGACGTTCATCAGTGATCGC
CATGCGCACTTTCCGATCAACATCTCTTCGCAGGACCGGAAGGAGCTGGA
GAAGGTCTTCGCGGGCCCTGCTGGGCTTCTCTTCGGGGACGGGCGCCCGG
CCAATCCCGCCGTTCCCTTCGATGCGCCAGGGTATGCCCCCACGCCCTTA
GCGTCTCCGATCGCCTCCATGAAGGCCGAAGCTGGTTCTCTAGTCGCCGA
CAACGGCCCGGTGCAATCCTGGGGCGAGATTCCCCAGACATTCAGTGCGA
CAGTCTTTGACCGAGCCGAGGAGAGCATCAAGTACCTCGTCCTGACCAAC
ACGTGGCCTAAGTTTGTTCGAAGTTGCGGCATCGCAGCTGAGGTTGATTT
GCTGGCAGGGAGCTAGATGGCACAGCACTTGGGGGATTCCAGGCACCGAG
GTCCATGGAACCGAGATGCAGCAAAAGTCGGAAATGGGCCGGGGCTGGGA
GTGGTGGCCTGGCGTGTTCGGACAGTTCTTCTGGTCCTGGATTGTGGGCC
CCGTCGTTCTCTGGAAATCCCGTCACATCCACGACACCCACGGCTGGCGA
GTCCAGACAATGGGCTGCGTCATCGCCAATCTCCCGGCGACGCCGATGTG
GCTCATCGCCCTCTATGTCCCCGCCATGGAGCGAGTCAATCAGTACTGGC
TACCGCCCCAGTGGTAGGTGCTCCGAGCCGTGACCAACAGGAACATAGAA
ATAAAGATGGAAAGAAGCACGAAAATGTGGCTGACACCTGTAGGATTTGT
CTCTCTATCTGGGTGATGGAGGTTTTTGCTGTTCTCCTGCCGTGCCGGGA
GGTAATGCGCTATCACGCTATCCGACAAGGGGCCTTCGATTCGATCGCAC
GGTGGGAACCAAATACCAATCTCTTTGCCGGTAGCACCATGGCCCGCAGG
TCCGCCTCCATTCTCGTCGAGCTCACAGGGTCTGGCCGGCAATCATGGAG
TAGATCTCTTGGCTCCAGCTCCAGCTCTCGGGACAGCATATTCACCAAGC
GTGCGCTTGAATGTGTCTTGGCGCGCAATCCCGCCCCGCTGCAGGATTTT
TCCGCCCATCGCGACTTTTCCGGAGAGAATATAGCTTTTCTGACCCGAGT
GGCAGAATGGAAGACCTCGCTGCCCCATGCGGTCTGGGATAGCAGGATCT
CAGACTATGGAGACCTTACTGACTTGATTCGGGAGCAGTTTCACCGCGCG
CTGTGTATTTACACGACGTTCATCAGTGATCGCCATGCGCACTTTCCGAT
CAACATCTCTTCGCAGGACCGGAAGGAGCTGGAGAAGGTCTTCGCGGGCC
CTGCTGGGCTTCTCTTCGGGGACGGGCGCCCGGCCAATCCCGCCGTTCCC
TTCGATGCGCCAGGGTATGCCCCCACGCCCTTAGCGTCTCCGATCGCCTC
CATGAAGGCCGAAGCTGGTTCTCTAGTCGCCGACAACGGCCCGGTGCAAT
CCTGGGGCGAGATTCCCCAGACATTCAGTGCGACAGTCTTTGACCGAGCC
GAGGAGAGCATCAAGTACCTCGTCCTGACCAACACGTGGCCTAAGTTTGT
TCGAAGTTGCGGCATCGCAGCTGAGGTTGATTTGCTGGCAGGGAGCTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012987-T1.utr5p1 | KJC3_012987-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012987-T1.utr3p1 | KJC3_012987-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036305 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC18F | supercontig | JC18F:5752..7542 + |
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