|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3039438..3042165- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012996-T1 ID=KJC3_012996-T1|Name=KJC3_012996-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2728bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCAGGGCAGGCGAGTGCTGCAACTCCGACTTATTTTGATTTCAAGTAT
ATGTACCTTTCCAGACACCGCACGTCGGCCCCAGGTATACTCCGCCAATT
CCTTTCCAATGGTCCAATCCTGAAATCGCCAACGGCCTCTACTAGATACT
CCGCATCGCGAACTTCGTCGGTTGGAGAGGAAGCTGTGATGTTCAAGAAA
GCCGTCAAGGAACATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCT
TACGCGCAGCAATAATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCA
CAGGGGTTAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTG
GGGTCCCTCCACGACGGTGTCTACTTCGATGAGAACGACTTCGACGACGA
TGACGACCTGGACTTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCA
TAACCAGACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTC
CATGACATAGCTGCGCAAGAGGAAGATATACCGATAGTCGACTTGACTTC
GCCGAGCAAGGTGGCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTC
CAGATGAGAGCGTTCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCT
TCGCCCCCCTCCCACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACC
ATGGCTGAAAGACGAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAAC
CGCAAACGCCTATACGGCCGAAACGTACGGATCCCTGGAATCAATCATAT
AGCGCGATCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTAT
GAAAGCACAAGCAAGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTT
CAATCTTTCTCAGCGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAG
CAAGGGAAGAGTATATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGT
GCTTATGAGGGAAATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGC
CGGACAGGGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATC
GAGGGCGTGACTCTCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACC
TGTTCCGGAGCTTGTCAAGAAGGTCAGCATTGGCGTCGGCGGACCACACC
AATAGACATTTGCTAACTACCTATAGATCAAGAAGAATCAGAAAGCCCGC
AATCGTTGGATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGT
CGACGGCGATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGA
ATAATGGTCGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTTT
TTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGC
ATTCGCAGCTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTAA
CCCATATTTTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGAG
CTTCGCCTGGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGCT
TTCTCGGCCTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTGTAAG
CCTGGCACACGCCCACACCACCAATCCCATCCCAAAATTAAGCACCCAGC
TCACTTCACCCCAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGG
CGCCCGAATGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTCG
ACAGCGGCACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAAC
TGCATGGCGCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCT
CATCAAAAACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCG
TGGCATTCATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAAC
GAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGAT
CATGGCTCGCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACG
GCAGTGGTCCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATGC
TTCGTGCAGCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGAC
GTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGG
TGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAG
ACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCA
GGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCA
TGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTT
TATTCTAAGCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCC
GAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGG
ATTATTTAGAGCATTTATATGGGTGATATGGAAGTGTATATCATTCTTAG
ACCATTTGCTTATACTAGGGGCTCATTGTCAGGAGAAGAATGGATTATCA
ATCCTTCTTTCTGTGTATTTTGTGATATGACCTGGTGTGGCTGTCTACCG
GACTTGCTAATATTAAACTATAGGGATT back to topCoding sequence (CDS) from alignment at ch1:3039438..3042165- >KJC3_012996-T1 ID=KJC3_012996-T1|Name=KJC3_012996-T1|organism=Aspergillus niger KJC3|type=CDS|length=7209bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGGCGCCCGAATGAGCC
GCCTATCTGGCGAAACAATGACCTTCAACGCCGTCGACAGCGGCACAATC
CAAGACCCCCAATTCCGCGAACGCCTACTAGCCAACTGCATGGCGCCACC
AGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCTCATCAAAAACATGG
AAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCGTGGCATTCATGGAC
GAAGCCACCTTCGACTACTACATCGACAACGAGAACGAATTCTCAGGGGG
GGCAGGAGAAGCAGGCAACAACAGCGACGACGAGATCATGGCTCGCGCAC
GCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACGGCAGTGGTCCCGGC
GGCATAACGCTCACCCGTAAATGGCCCCTCGTATGCTTCGTGCAGCCTGA
CGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGACGTGGAAGATCGAGC
TTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGGTGCCGCTTATTCTG
GCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAGACGCTGCAGCGGGT
AAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCAGGCCTATGTTGCGC
TGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCATGCGGTTCGAGGCG
CGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTTTATTCTAAGCTTGT
TAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCCGAAGTCGGGTGGTG
GTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGGATTATTTAGAGCAT
TTATATGGGTGAATCAAGAAGAATCAGAAAGCCCGCAATCGTTGGATGCG
CACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGTCGACGGCGATCTCT
TCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGAATAATGGTCGTCCT
TTCGGAGGTATACAACTAGTAGTCACCGGTGACTTTTTCCAACTCCCTCC
CGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGCATTCGCAGCTGCGA
CCTGGAACACCTCCATACAACACACCATCCTCCTAACCCATATTTTCCGT
CAACGAGACCCCGAATTCGCCGACATGCTCAACGAGCTTCGCCTGGGAAA
GATCTCACCACGGACCATCGACACATTCAAACAGCTTTCTCGGCCTCTCG
ACTTCCATGACTCCCTCGAGGCCACCGAACTATGTACCTTTCCAGACACC
GCACGTCGGCCCCAGGTATACTCCGCCAATTCCTTTCCAATGGTCCAATC
CTGAAATCGCCAACGGCCTCTACTAGATACTCCGCATCGCGAACTTCGTC
GGTTGGAGAGGAAGCTGTGATGTTCAAGAAAGCCGTCAAGGAACATTCAG
TAGCGTCAGCGACTCCGCTACAGTCCACGCTTACGCGCAGCAATAATGGA
AGTGCTTCGATGAGACCCCCGCCGCCGTCCACAGGGGTTAAGCGCAAGAT
TGAGATGGCTACCGTGCGAGAGTCTAATCTGGGGTCCCTCCACGACGGTG
TCTACTTCGATGAGAACGACTTCGACGACGATGACGACCTGGACTTTGAG
GAACCCGATCCATTCATTCCCCCTGCCCCCATAACCAGACCGAGCGTCCC
GAAATCCGAACCGCCCAAGTACCCGTCCCTCCATGACATAGCTGCGCAAG
AGGAAGATATACCGATAGTCGACTTGACTTCGCCGAGCAAGGTGGCAGCG
GAGGTTAAATATCCTGATTTACCTCCAGTTCCAGATGAGAGCGTTCCGCC
TTCCAGCAGCATACAAATCCCATGGTCTTCTTCGCCCCCCTCCCACTTCC
AACAACCGACCAAGAAGCCTCGAACTTTACCATGGCTGAAAGACGAGCCG
GAACCAGAACCAGAACCACCGTCTCTGAAACCGCAAACGCCTATACGGCC
GAAACGTACGGATCCCTGGAATCAATCATATAGCGCGATCAAGGATGGGC
AAAGGGAACTGCGTCGGCAGAATAAAACTATGAAAGCACAAGCAAGCGGT
CAAATACACAACCCTCGCACGAAGGTGGCTTCAATCTTTCTCAGCGATGA
GCAACGCCATGTCCTGGACGCGGTTGTACAGCAAGGGAAGAGTATATTCT
TTACAGGATCTGCCGGAACGGGCAAGTCGGTGCTTATGAGGGAAATCATC
AAGAAACTGCGTGATAAGTATAAGAAAGAGCCGGACAGGGTTGCGGTAAC
AGCATCTACTGGCTTAGCAGCGTGTAATATCGAGGGCGTGACTCTCCACA
GTTTCGCAGGTATTGGACTGGGGAAGGAACCTGTTCCGGAGCTTGTCAAG
AAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGGCGCCCGAATGA
GCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTCGACAGCGGCACA
ATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAACTGCATGGCGCC
ACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCTCATCAAAAACA
TGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCGTGGCATTCATG
GACGAAGCCACCTTCGACTACTACATCGACAACGAGAACGAATTCTCAGG
GGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGATCATGGCTCGCG
CACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACGGCAGTGGTCCC
GGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATGCTTCGTGCAGCC
TGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGACGTGGAAGATCG
AGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGGTGCCGCTTATT
CTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAGACGCTGCAGCG
GGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCAGGCCTATGTTG
CGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCATGCGGTTCGAG
GCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTTTATTCTAAGCT
TGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCCGAAGTCGGGTG
GTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGGATTATTTAGAG
CATTTATATGGGTGAATCAAGAAGAATCAGAAAGCCCGCAATCGTTGGAT
GCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGTCGACGGCGATC
TCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGAATAATGGTCGT
CCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTTTTTCCAACTCCC
TCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGCATTCGCAGCTG
CGACCTGGAACACCTCCATACAACACACCATCCTCCTAACCCATATTTTC
CGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGAGCTTCGCCTGGG
AAAGATCTCACCACGGACCATCGACACATTCAAACAGCTTTCTCGGCCTC
TCGACTTCCATGACTCCCTCGAGGCCACCGAACTATGTACCTTTCCAGAC
ACCGCACGTCGGCCCCAGGTATACTCCGCCAATTCCTTTCCAATGGTCCA
ATCCTGAAATCGCCAACGGCCTCTACTAGATACTCCGCATCGCGAACTTC
GTCGGTTGGAGAGGAAGCTGTGATGTTCAAGAAAGCCGTCAAGGAACATT
CAGTAGCGTCAGCGACTCCGCTACAGTCCACGCTTACGCGCAGCAATAAT
GGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCACAGGGGTTAAGCGCAA
GATTGAGATGGCTACCGTGCGAGAGTCTAATCTGGGGTCCCTCCACGACG
GTGTCTACTTCGATGAGAACGACTTCGACGACGATGACGACCTGGACTTT
GAGGAACCCGATCCATTCATTCCCCCTGCCCCCATAACCAGACCGAGCGT
CCCGAAATCCGAACCGCCCAAGTACCCGTCCCTCCATGACATAGCTGCGC
AAGAGGAAGATATACCGATAGTCGACTTGACTTCGCCGAGCAAGGTGGCA
GCGGAGGTTAAATATCCTGATTTACCTCCAGTTCCAGATGAGAGCGTTCC
GCCTTCCAGCAGCATACAAATCCCATGGTCTTCTTCGCCCCCCTCCCACT
TCCAACAACCGACCAAGAAGCCTCGAACTTTACCATGGCTGAAAGACGAG
CCGGAACCAGAACCAGAACCACCGTCTCTGAAACCGCAAACGCCTATACG
GCCGAAACGTACGGATCCCTGGAATCAATCATATAGCGCGATCAAGGATG
GGCAAAGGGAACTGCGTCGGCAGAATAAAACTATGAAAGCACAAGCAAGC
GGTCAAATACACAACCCTCGCACGAAGGTGGCTTCAATCTTTCTCAGCGA
TGAGCAACGCCATGTCCTGGACGCGGTTGTACAGCAAGGGAAGAGTATAT
TCTTTACAGGATCTGCCGGAACGGGCAAGTCGGTGCTTATGAGGGAAATC
ATCAAGAAACTGCGTGATAAGTATAAGAAAGAGCCGGACAGGGTTGCGGT
AACAGCATCTACTGGCTTAGCAGCGTGTAATATCGAGGGCGTGACTCTCC
ACAGTTTCGCAGGTATTGGACTGGGGAAGGAACCTGTTCCGGAGCTTGTC
AAGAAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGGCGCCCGAA
TGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTCGACAGCGGC
ACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAACTGCATGGC
GCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCTCATCAAAA
ACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCGTGGCATTC
ATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAACGAATTCTC
AGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGATCATGGCTC
GCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACGGCAGTGGT
CCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATGCTTCGTGCA
GCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGACGTGGAAGA
TCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGGTGCCGCTT
ATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAGACGCTGCA
GCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCAGGCCTATG
TTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCATGCGGTTC
GAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTTTATTCTAA
GCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCCGAAGTCGG
GTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGGATTATTTA
GAGCATTTATATGGGTGAATCAAGAAGAATCAGAAAGCCCGCAATCGTTG
GATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGTCGACGGCG
ATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGAATAATGGT
CGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTTTTTCCAACT
CCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGCATTCGCAG
CTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTAACCCATATT
TTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGAGCTTCGCCT
GGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGCTTTCTCGGC
CTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTATGTACCTTTCCA
GACACCGCACGTCGGCCCCAGGTATACTCCGCCAATTCCTTTCCAATGGT
CCAATCCTGAAATCGCCAACGGCCTCTACTAGATACTCCGCATCGCGAAC
TTCGTCGGTTGGAGAGGAAGCTGTGATGTTCAAGAAAGCCGTCAAGGAAC
ATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCTTACGCGCAGCAAT
AATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCACAGGGGTTAAGCG
CAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTGGGGTCCCTCCACG
ACGGTGTCTACTTCGATGAGAACGACTTCGACGACGATGACGACCTGGAC
TTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCATAACCAGACCGAG
CGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTCCATGACATAGCTG
CGCAAGAGGAAGATATACCGATAGTCGACTTGACTTCGCCGAGCAAGGTG
GCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTCCAGATGAGAGCGT
TCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCTTCGCCCCCCTCCC
ACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACCATGGCTGAAAGAC
GAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAACCGCAAACGCCTAT
ACGGCCGAAACGTACGGATCCCTGGAATCAATCATATAGCGCGATCAAGG
ATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTATGAAAGCACAAGCA
AGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTTCAATCTTTCTCAG
CGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAGCAAGGGAAGAGTA
TATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGTGCTTATGAGGGAA
ATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGCCGGACAGGGTTGC
GGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATCGAGGGCGTGACTC
TCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACCTGTTCCGGAGCTT
GTCAAGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012996-T1.utr3p1 | KJC3_012996-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012996-T1.utr5p1 | KJC3_012996-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.14 |
| Note | antiSMASH:Cluster_1.13 |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR010285 |
| DBxref | InterPro:IPR003593 |
| DBxref | PFAM:PF05970 |
| DBxref | PFAM:PF13604 |
| DBxref | PFAM:PF13401 |
| DBxref | PFAM:PF13245 |
| Product | DNA helicase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3039438..3042165 - |
|
