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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3639907..3644645+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012997-T1 ID=KJC3_012997-T1|Name=KJC3_012997-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4739bp|location=Sequence derived from alignment at ch1:3639907..3644645+ (Aspergillus niger KJC3)
CGCCTAGATAGCGAAGAATCAAGCGTTTTCAACGACTTCAGTATTGACCT
AAAACGTCGTTTCAACAGGTTATGAGCCCGGCTCTTCGCTCGTGAGGCTA
ACCAGCAAAGATCTGAGCCACCATACACACGAAGCAAGCCGCAATTGCAA
CGGGGACACGCACCGCGATACCCCTATCTCAAAACACCAAAACACCGCGA
ATATCAAAATATTCAACCGCCGGAAGCAGACCCCAGAATGTCGCAACCAG
GCAGATACCACTCTTTACAACATGTCTCGAATACAGAGGCAGTAGCCATA
CAACCAAAGACACAAGCAGATAGGCTTCCAGTAAAGCTACCAGAAGGCGT
TCAACCCGTATCTGAAAGGTTGAAAGGGCGAGAAGACTACTCAACGTGGC
GCTTTGAAATATGTCAAATCCTGAAGAACGTCGGTCTACAAGACATGATC
GACAAGGGTCTATCCCATCCTAGTACAAACCACACGAATTACTGGCTATG
GCACCACCTGTCAATCAACATCCAGTCCTGGCTAGCTAGCCAGCTGTCAG
ACCCCCTAAAGAGGGCACTGATGACGTCCCCTGACGCGCACGACTACGCG
GACGATGCCTACGAAGTCATCAAATCACTCGTCCTAGGCCACGGCCACAC
GCTTTGCCAAACAACGTACTTCGACCTCATCCACAAACGCCGATCCGACT
ACTCTACCGTTGAACAATACGTGGAGGCGTTCAAACACGCATACAACTTC
GCTAAAGAGTTGAAAGTCGGGATATCACCATACTGCGGGTTGCTACACCT
GCTCAAAGAGCTGGAATCGGACCTTCCAACGTGGGTGTCAACAGTGGAGT
GCAATTTGCCTGATAATGCTGCGGACACCCTCCAGGAGAAAGAGTTTCTA
GTTTACTGCAGGACCGCAATCGAACAAGGTAATAAACAAATGCAAAGATA
TTCTTTCGCTGCGCCAGCGAAGAACACTGGAAGCACCACCAAGTCGGGAA
GCACTGCAACGACCTCAGAGTGGAAGAAATCAACATTCCCACCGAAAGGA
ACGACCCCTGAGGAACACGCTAGAAAGATGCGAAACTTGAAGCCAGAGAT
GACTAAGGGACGCTGCGCTTTCTGTAAGACACTAGGCCATGGAGCAACCA
CCTGCTGGCGCTTGAATCCTGACCTCCGGCCAGAGGATTATAGGCCTCGT
ATAGAAGGCATCTGGTGGTTCAAAGGATCGAAGCCTAGCGAAGCATCAAA
TGCAGCGGTAGGCGAAATAGGATCCGATGACGAAAACCCGTATATTTTGA
ATTTTTCTGGCCTAGCCGTTGCAAACGCCACGAACACCTCGCTACGCTGG
ATATATGATACAGGCAGCTCACAGCATCTAACACCTGACTGCGCTTCCCT
AAGCGGTCTCCACCAATTGAAACCCCACGAATACTACCAATATGGCACCT
CGAACGGGGGAATCGGTGTTGCAAAATCGGCAGGGTATCTGACCCTGACC
CTAGCTGCAAACGGCCAAAATACGGTGTTGAAGATCAAGGCCTACCACCA
ACCGGACCTACCCTACGGGCTCCTTTCTTCCAACCGCCTACGTACAGACC
TTGGCATCTACGCTACCACTAAGGACCTGACCCTACGCAGGGACCGGGAT
GACAAGATCGTCGGCCACCTGCAGGCATCGAAAAACGTGCTTTTCGTCAG
GACAAAAGACCCTGACCTAGCGCTAGCGGCAGTGGACCCCCTACTCTTGC
ACCGGCGATACGGGCACGCAGGATTCCGCCGAATCGCTACCACTGCAAAG
GATCATCAAATTGAACTCGAACACAGGGACACCCTAGAGTGCGAAGCATG
CTCGCTAGGCAAGGCCACACGCCTCGTTTCAAGGGACCCAATCCCAAAGA
CTAATGATCCAACACAGCTCTGGCATGCAGACATCCAAAAGGTGACCCCG
ATTGGTCATGGCGGATTCAACTACTTTCTACTCATGGTCAACAACGCTAC
TCGCTTAGTGAGGACGGCCATGCTTAAACACAAAGATGACGCCTCCGACG
AGCTGATCAGGATGAATATGGAACACAAGAATATGGTCGGCCGATACGTG
GCCACCTGGCACCTAGATGGTGGCCGCGAGTTCAACCGCTTTAGGAAATG
GGCGAATCATGCAGAGCGAGGCATTCAAATCAAAATATCACCTCCTCGAA
CACCCGAAGCCAACGGCCTAGCTGAACGATACGGCGGCTTGCTCAACCGA
ATGAGCAGGGTCATGATACTAGATGCTGGCCTCCCTGCTCACCTCTGGCC
GTACGCTGTACGCCTCTCAGCGCAGATCCTGAATCGCCTCGTCCCCTACC
ACAGCGCTGTCAGGAAGACCCCCGTGTTCCTATACAGATCCCACTACAAC
CTCCCGAATCCTAACGCGTCACTAGACTTCCTACGCGTATTCGGATGTCG
TGCCTACCAACACATCCCGCAGGAAGATCGAGTCGCATCCCAGAAAATGG
GACCTCGTGCAAAAGTCGGATACTTCGTCGGTTTCGATGGGGACAACGGA
CACGTTTACTACGTGTGGGATCCTATATCTGATAAAATTAAACGATCACG
AGACGTTAAATTCAACGAAGATCGAACCTACAAGGATGACAAGGAGGATC
CCGGTGGAGTTCCTACACGCGAACCTGACCCTAAAGGACCAACACCAGCT
GGCCCAGGTGCCGCGCTCAAGTTAGACAACGCGTTCCTGCACCAAACAAC
CAATATATCAGATAACACGAGGGCCCTGATTGAGCAACCGGACCCTGAAG
AAGACGTCATCCGAGGCAGAATCCACACCATATCTGCCTCCGCAGAGCCT
CCACCTACACGCTCGATCGAGAATGCCACAGAATACGAGGCATCCTCAAC
GAAATACGCCGCGCAGGACTACCGCCTGCCGGACCCTACTGAGCCAGAAG
AACAACCCATACTGAGGCGCTCCGCAAGGACCACTAAAGGCAAATCATCA
ACATGGCCAGATTACCAACAACTGGCCACGGTTGACCGGGTGACCCTACC
CCACCTCAAACAACACGAAGTGGTCGTTCCGAACACCTACAGCGAAGCGA
TGAAGTCCCCGCTGGCACCATACTGGAAAGATGCTATGGATACACAGATC
GATAAGATACAGAACATGGGCACCTACGAGATCGTGAACCGACCTCCAAC
CGCTCGCGCAATCCCAGGCAAGTGGGTGTACGACCTCAAGGTCAACACTG
ACGGATTCGTCACCCAATTCCGTGCTAGATGGGTAGTCTGCGGCAACCGC
CAGATACCAGGCATCGATTACGACGAATCGTTCGCTCCTGTCGCCAGCGA
AGCGGCCCTGAAGCTATTCATGACGAACGTCGCTATAAAAGATCTTGAAT
GGGAACAATGTGATATAGTATCTGCTTATCTACACGCGCAGATACAGGGC
AAACGCGTGTTCATGAAACAACCTACCGGATACCATGAAGGACCACCGGA
TCAGGTGTGCCTATTAAAGATGGCCCTCTACGGCCTCCGCCAGGCGGCCC
ACCTCTGGCACCAAACGTTTGACGAAACACTTAAAAGAATCGGTTTCGAA
CCACTGAGGGAGGATCCCTGCGTATACAAAAAGGGTGATATCTGGTTGAT
TATTTATGTTGACGACTCCGCTATCGCTGGCCCCAGGAAGGAAGACCTAG
CCGAGGTCAAACAACACCTAAACAAGGCATTTGGCCTGAAGGAAATGGGG
GAACCAAAGGTTCTACTAGGATGCAACGTTCAACGTGACTACCAAGCAGG
CACGATATCACTATCCCAAACAACGTACGTGGAGGAGTGCCTCAATGCAG
CGAACCTAGGATCCTGCACCCCCTCCGCCATTCCGATGACCGTTGCCTAC
AAAAAGTCAGATCGCTCGAATATGACTACCGAAAACGTCAACCTAGCCGA
ATATCAAAGCCTTGTAGGGCGTTTGAACTGGCTAACCACAAAGACCCGCC
CCGATATACGTCATGCAACGTTTAGACTTCAAAGGCGCATGAACACTCCC
ACTACGGCCGACGCTAAAGCATTGAAAATTGTATACAGATATCTGAAAAG
GTCCATCCCGTACGGGATCACCCTCGCCACTGACCATACCAAAGGCATCG
AAGTCTTCGTAGATGCCGCCCACGCTGACCACGAAGACGGCAAATCAACG
GAGGGATACGTCATCTTCTACGCTGGCGGCCCAATCAGCTGGTCATCCAG
GAAGCAATCGCTAGTTGCACCGTCATCTACGGTAGCAGAATACTGCGTGT
TTGACTCCGCCGCCAAAGAAGCCTTGTATATAAAGAAATTGGTTGAAGCG
TTTGACCTCAAGGCCTCCGTTGACGGCAGGATACCCTTGTACACCGACGC
CGCCAACTCCCTACGGATCCTGAACCACGGAGGCTACACCAGGTCCACTA
GATGGCTCGATAATCGTTACCTATTCGTAGCCGATCTGATCACGAAGAAC
GCTATCACCATTCAACACATCCCAGGGACCACCAACCCGGCGGACGGCCT
CACCAAGCCGCTTGATAACGAATCGTTCAAAGCGTTCAGGCACCTCCTCG
GAATGACCCCCATCTCCTCCCCGAACCTGCATCCAGGGAACACCGGTTGA
GATAGCCGTTCCTTCCTATCTAGGCAATGCCTAGAGCCTCGTTACGAACG
CTCCCTCGCCTAGGGGGCCGTGTTGGAACGTAATCTCAG back to topCoding sequence (CDS) from alignment at ch1:3639907..3644645+ >KJC3_012997-T1 ID=KJC3_012997-T1|Name=KJC3_012997-T1|organism=Aspergillus niger KJC3|type=CDS|length=4413bp|location=Sequence derived from alignment at ch1:3639907..3644645+ (Aspergillus niger KJC3)
ATGTCGCAACCAGGCAGATACCACTCTTTACAACATGTCTCGAATACAGA
GGCAGTAGCCATACAACCAAAGACACAAGCAGATAGGCTTCCAGTAAAGC
TACCAGAAGGCGTTCAACCCGTATCTGAAAGGTTGAAAGGGCGAGAAGAC
TACTCAACGTGGCGCTTTGAAATATGTCAAATCCTGAAGAACGTCGGTCT
ACAAGACATGATCGACAAGGGTCTATCCCATCCTAGTACAAACCACACGA
ATTACTGGCTATGGCACCACCTGTCAATCAACATCCAGTCCTGGCTAGCT
AGCCAGCTGTCAGACCCCCTAAAGAGGGCACTGATGACGTCCCCTGACGC
GCACGACTACGCGGACGATGCCTACGAAGTCATCAAATCACTCGTCCTAG
GCCACGGCCACACGCTTTGCCAAACAACGTACTTCGACCTCATCCACAAA
CGCCGATCCGACTACTCTACCGTTGAACAATACGTGGAGGCGTTCAAACA
CGCATACAACTTCGCTAAAGAGTTGAAAGTCGGGATATCACCATACTGCG
GGTTGCTACACCTGCTCAAAGAGCTGGAATCGGACCTTCCAACGTGGGTG
TCAACAGTGGAGTGCAATTTGCCTGATAATGCTGCGGACACCCTCCAGGA
GAAAGAGTTTCTAGTTTACTGCAGGACCGCAATCGAACAAGGTAATAAAC
AAATGCAAAGATATTCTTTCGCTGCGCCAGCGAAGAACACTGGAAGCACC
ACCAAGTCGGGAAGCACTGCAACGACCTCAGAGTGGAAGAAATCAACATT
CCCACCGAAAGGAACGACCCCTGAGGAACACGCTAGAAAGATGCGAAACT
TGAAGCCAGAGATGACTAAGGGACGCTGCGCTTTCTGTAAGACACTAGGC
CATGGAGCAACCACCTGCTGGCGCTTGAATCCTGACCTCCGGCCAGAGGA
TTATAGGCCTCGTATAGAAGGCATCTGGTGGTTCAAAGGATCGAAGCCTA
GCGAAGCATCAAATGCAGCGGTAGGCGAAATAGGATCCGATGACGAAAAC
CCGTATATTTTGAATTTTTCTGGCCTAGCCGTTGCAAACGCCACGAACAC
CTCGCTACGCTGGATATATGATACAGGCAGCTCACAGCATCTAACACCTG
ACTGCGCTTCCCTAAGCGGTCTCCACCAATTGAAACCCCACGAATACTAC
CAATATGGCACCTCGAACGGGGGAATCGGTGTTGCAAAATCGGCAGGGTA
TCTGACCCTGACCCTAGCTGCAAACGGCCAAAATACGGTGTTGAAGATCA
AGGCCTACCACCAACCGGACCTACCCTACGGGCTCCTTTCTTCCAACCGC
CTACGTACAGACCTTGGCATCTACGCTACCACTAAGGACCTGACCCTACG
CAGGGACCGGGATGACAAGATCGTCGGCCACCTGCAGGCATCGAAAAACG
TGCTTTTCGTCAGGACAAAAGACCCTGACCTAGCGCTAGCGGCAGTGGAC
CCCCTACTCTTGCACCGGCGATACGGGCACGCAGGATTCCGCCGAATCGC
TACCACTGCAAAGGATCATCAAATTGAACTCGAACACAGGGACACCCTAG
AGTGCGAAGCATGCTCGCTAGGCAAGGCCACACGCCTCGTTTCAAGGGAC
CCAATCCCAAAGACTAATGATCCAACACAGCTCTGGCATGCAGACATCCA
AAAGGTGACCCCGATTGGTCATGGCGGATTCAACTACTTTCTACTCATGG
TCAACAACGCTACTCGCTTAGTGAGGACGGCCATGCTTAAACACAAAGAT
GACGCCTCCGACGAGCTGATCAGGATGAATATGGAACACAAGAATATGGT
CGGCCGATACGTGGCCACCTGGCACCTAGATGGTGGCCGCGAGTTCAACC
GCTTTAGGAAATGGGCGAATCATGCAGAGCGAGGCATTCAAATCAAAATA
TCACCTCCTCGAACACCCGAAGCCAACGGCCTAGCTGAACGATACGGCGG
CTTGCTCAACCGAATGAGCAGGGTCATGATACTAGATGCTGGCCTCCCTG
CTCACCTCTGGCCGTACGCTGTACGCCTCTCAGCGCAGATCCTGAATCGC
CTCGTCCCCTACCACAGCGCTGTCAGGAAGACCCCCGTGTTCCTATACAG
ATCCCACTACAACCTCCCGAATCCTAACGCGTCACTAGACTTCCTACGCG
TATTCGGATGTCGTGCCTACCAACACATCCCGCAGGAAGATCGAGTCGCA
TCCCAGAAAATGGGACCTCGTGCAAAAGTCGGATACTTCGTCGGTTTCGA
TGGGGACAACGGACACGTTTACTACGTGTGGGATCCTATATCTGATAAAA
TTAAACGATCACGAGACGTTAAATTCAACGAAGATCGAACCTACAAGGAT
GACAAGGAGGATCCCGGTGGAGTTCCTACACGCGAACCTGACCCTAAAGG
ACCAACACCAGCTGGCCCAGGTGCCGCGCTCAAGTTAGACAACGCGTTCC
TGCACCAAACAACCAATATATCAGATAACACGAGGGCCCTGATTGAGCAA
CCGGACCCTGAAGAAGACGTCATCCGAGGCAGAATCCACACCATATCTGC
CTCCGCAGAGCCTCCACCTACACGCTCGATCGAGAATGCCACAGAATACG
AGGCATCCTCAACGAAATACGCCGCGCAGGACTACCGCCTGCCGGACCCT
ACTGAGCCAGAAGAACAACCCATACTGAGGCGCTCCGCAAGGACCACTAA
AGGCAAATCATCAACATGGCCAGATTACCAACAACTGGCCACGGTTGACC
GGGTGACCCTACCCCACCTCAAACAACACGAAGTGGTCGTTCCGAACACC
TACAGCGAAGCGATGAAGTCCCCGCTGGCACCATACTGGAAAGATGCTAT
GGATACACAGATCGATAAGATACAGAACATGGGCACCTACGAGATCGTGA
ACCGACCTCCAACCGCTCGCGCAATCCCAGGCAAGTGGGTGTACGACCTC
AAGGTCAACACTGACGGATTCGTCACCCAATTCCGTGCTAGATGGGTAGT
CTGCGGCAACCGCCAGATACCAGGCATCGATTACGACGAATCGTTCGCTC
CTGTCGCCAGCGAAGCGGCCCTGAAGCTATTCATGACGAACGTCGCTATA
AAAGATCTTGAATGGGAACAATGTGATATAGTATCTGCTTATCTACACGC
GCAGATACAGGGCAAACGCGTGTTCATGAAACAACCTACCGGATACCATG
AAGGACCACCGGATCAGGTGTGCCTATTAAAGATGGCCCTCTACGGCCTC
CGCCAGGCGGCCCACCTCTGGCACCAAACGTTTGACGAAACACTTAAAAG
AATCGGTTTCGAACCACTGAGGGAGGATCCCTGCGTATACAAAAAGGGTG
ATATCTGGTTGATTATTTATGTTGACGACTCCGCTATCGCTGGCCCCAGG
AAGGAAGACCTAGCCGAGGTCAAACAACACCTAAACAAGGCATTTGGCCT
GAAGGAAATGGGGGAACCAAAGGTTCTACTAGGATGCAACGTTCAACGTG
ACTACCAAGCAGGCACGATATCACTATCCCAAACAACGTACGTGGAGGAG
TGCCTCAATGCAGCGAACCTAGGATCCTGCACCCCCTCCGCCATTCCGAT
GACCGTTGCCTACAAAAAGTCAGATCGCTCGAATATGACTACCGAAAACG
TCAACCTAGCCGAATATCAAAGCCTTGTAGGGCGTTTGAACTGGCTAACC
ACAAAGACCCGCCCCGATATACGTCATGCAACGTTTAGACTTCAAAGGCG
CATGAACACTCCCACTACGGCCGACGCTAAAGCATTGAAAATTGTATACA
GATATCTGAAAAGGTCCATCCCGTACGGGATCACCCTCGCCACTGACCAT
ACCAAAGGCATCGAAGTCTTCGTAGATGCCGCCCACGCTGACCACGAAGA
CGGCAAATCAACGGAGGGATACGTCATCTTCTACGCTGGCGGCCCAATCA
GCTGGTCATCCAGGAAGCAATCGCTAGTTGCACCGTCATCTACGGTAGCA
GAATACTGCGTGTTTGACTCCGCCGCCAAAGAAGCCTTGTATATAAAGAA
ATTGGTTGAAGCGTTTGACCTCAAGGCCTCCGTTGACGGCAGGATACCCT
TGTACACCGACGCCGCCAACTCCCTACGGATCCTGAACCACGGAGGCTAC
ACCAGGTCCACTAGATGGCTCGATAATCGTTACCTATTCGTAGCCGATCT
GATCACGAAGAACGCTATCACCATTCAACACATCCCAGGGACCACCAACC
CGGCGGACGGCCTCACCAAGCCGCTTGATAACGAATCGTTCAAAGCGTTC
AGGCACCTCCTCGGAATGACCCCCATCTCCTCCCCGAACCTGCATCCAGG
GAACACCGGTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0015074 | DNA integration |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012997-T1.utr5p1 | KJC3_012997-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012997-T1.utr3p1 | KJC3_012997-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR043502 |
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR013103 |
| DBxref | InterPro:IPR036397 |
| DBxref | InterPro:IPR001584 |
| DBxref | PFAM:PF07727 |
| DBxref | PFAM:PF00665 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| ch1 | supercontig | ch1:3639907..3644645 + |
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