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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:661108..666485- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013016-T1 ID=KJC3_013016-T1|Name=KJC3_013016-T1|organism=Aspergillus niger KJC3|type=mRNA|length=5378bp|location=Sequence derived from alignment at ch3:661108..666485- (Aspergillus niger KJC3)
GCAAGGAGGCACCCTCGCGGTGTACAATAGACGGGGAATTACGGACTTTT
CTCCACTTGTCGATGAGATCCAATGGGTAATGACTGTGTGGTGTCGAACC
CTCCGAGGCTAGATTATACAGTAGCGCCGTTACGCAAAATCAGCAGTCAA
CGAGAGAGGTAAGCCAACTCACTGTGTTTGGAAAGCGTATGTACTTGCTC
ACTAATTTCTTGGTTGTACAATTTCATCTCCGCAAGATAGTACAATGGAA
GCATCTTCTACAGTACCTATATAAACGGATTGTGAGTATCGAGAGTGATG
CAACTGAAATAGTTGACTCCACTAGTTAAGGATTGGAAGGGGCATCGAAC
TTTTCTAACTACTACTACAGCAAATTTAGGTATCTTCGAACCAGCGCATT
TTGCGGGGTCAACTGAGCCTAAACCGACGTATATTGCTGCCTGAGGCACC
GATGGACTCCGGCCGAAGGGGTGAGTAAGCTGGTAAACAACCCGACACGC
AATTCTCTCCCGACTCTATTTCCCGCGCCGGATAGAGCCTCCTCCGCTGT
TGAGTTGCTTTCGCTCGATTATCGGCCGAGCAACTCTTCGAAACGGGATG
GAGGAAACAATAGCCGAATTACGACGTCAGATTGAAGAACAACAAAGGCT
GCGAGAAGCGGCAGAGCGCCGTGAGGAGGAAGAGAGACAGGCGCGAGAAG
AGGCAGAACGCCGTGAGGAGGAAGAGAGACAGGCGCGAGAAGAGGCAGAA
CGCCGTGAGGAGGAAGAGAGAGAGGCGCGAGAAAACGAGAGGCAAGCACG
AGAAGCGGCAGAACGCCGTGAGGAGGAAGAGAGACAGGCGCGAGAAGACG
CTGAACGTCGAGTGCAACCCAACTCCCTGTTTCGCCTCCTCGATCGCTGC
CACAATTCTCTCTCCCAAGCGATCCGAGTTGAGGCAGATGCCACCCTTAC
TACTCAGGGCGACGCGGCCGATCCTGTGAATCGACTCTACCCCAAGCACA
TCATCCCTTGGCGTAACTTCCCCCAACTACAGGAACAGATCTGGGACAAA
TTCGACCGTAATAATGCCTTTACCACGCGCCCACTATTCCCCTCTGATAC
CCAAATCGATTATGTCGTCATGAATATCCAGAACAGACCAATCTATTCGG
AAGCCTCTCTTCGGAATTTCGAGCGGGACACGGTGGACAACTTTGTTGAA
AAGGTCATTGAGGTTTTGCGAGACGATGAACCCCTTCGAGATGAGTTTGG
AATCCAAGGCCGAGTCAGCTTCTATGATCGCGCAAACCCATTAGAAACTT
CGCTCGAGAACAGCCTAGATCAAATGAATCTCGAGGACGCGCAGACACCC
CAACGACCGGCGAACACGAGGCGTGGAAGAAGCCGGGGACGAGGGAGAGG
AGCCGTGCGGAGACAGATGAGGGATGGCACTGCGCGACGACGCAATCGGC
GCGCCGACCAGTTCTGCGTGCACCTTGTGGCGGATGAACGGAAAATGCCG
GTGTATGCAGTGGAGTTCAAAGCGCCGCACAAAGTGACGATCCCCGAACT
GGTGGCGGGTCTACACCCGATAGATCTGGATCGCGAGGTCATTGACCAAG
AGGGCGACACGTTTGAGTTTTATGCCACCCGCCTGGTCGCGGCCGTGGTC
ATTCAGATATTCTCATACATGATCGACAGTGGCGTTCGATACGGCTACAT
CTGCACCGGGGAGGCTTTCGTGTTCCTTCATATCCCAAAGGATGATCCCA
CCATTATTCAATATTTCTTGTGTATCCCGAATCAGGATGCGCAGGCGGAT
GTGCAGGCGGACGATGAAGTGCGCCTCCACCGGACTGCCATCGGTCAGGT
GCTTGCGTTCACGCTTCAAGCGCTGGCCGTCGAACCTCCGACTCAACAAT
GGCACGATGTGGCACACGACCAGCTAACAAGCTGGAAGGTCGAATATCTC
GACGTGTTGAGACAAATTCCCGAAACTCTCCGTAAAGACCCGCCGGCGTC
TAATTATCGGCCCTCTCACTGGAAACCAGTTCGGAAAATACACTACACAC
GCGCTCGCGCTCGCGCTCGTTGTCAACCGGGCGCATCGACACCGAAGCAC
TCGTCCACTGAAGGCAGCGGCAGTGATCAAGAATCGCATTCGCCATCCGC
CGCAGCCGCGTCCCGCATCCGATCAAGCCAGGGCCAAGGCAACCACCGCC
AATCCACCCGGGGAGGTGAAAGGACACGAGCCGGCCGAGACCATAAACAG
ACCTCTCGGCAAGACAGACATTTTACGCGACCATACTGCACCATGGCCTG
CATCCGCGGCTTGGCTAACCGAGAACCACTGGATCAGAATTGCCCCAACT
GGGAACTCCACGGTGGTCCAAGACACTCCATCGGACCGCAGGAGTTCACA
CGTCAGCTCCATCGTCAACTGGCCCGAGATCGGGAGCTTGGATTCGAACA
GCTACACGTGTGTGGTCGGACGGGATATCTCATTAAAGCCACCCTCCTTT
CCTGCGGATACACGGTGATCCTGAAAGCAACGACTGTGGAGAAGCAGCAT
CGCCTTCAAACGGAAGTGGACAATTATCACCGGCTCCGGAACTTGCAGGG
ACAATACATCCCTGTCTGTCTTGGGGACTTTCAGCCTCGCGTTGCATATT
GGTACCACGGCAGGTTAATGGCGCAGATGATGATCTTGAGCTGGTCTGGA
ACGCGGCTTCAGCATACCATCCATGATGGCAATTCCCACTTCTTTCACCA
AGAGCGCGACAAAGCTCTGACCGTGCTCCGGTCGCGTGGAGTTATCCACT
GCGACAGTGAGTGGCGCAATATGCTGTGGGATGACCTGAGTGGCCGCTTG
GTTGTCATTGACCTAGAGGATGTGCAATGGTTGAAGCGCGCTAGGGCCCT
TGAATCCGTCTCTGCGAATACGCGGCGAACTCGTTGCGTCAGAGCGATGA
AATATAAACCCGGCTTGGAAAGGGTGGACATTCCGCAACACGGCAGTACC
TTAAGCTTGTAACTGTATGTTCAGAAACGTTGCAAAGCATTCCGCCACAA
GACGTCGTGGCTTTAACTTACACCGAGTACTAAATATACATTTTGCAACA
CGAACCCTACATGTTACAAGAGCGCGACTGCACAGCAGGCTTGGGCGGTG
GAATTATCTACACGACCTTCCCAGGCTTTGCAGTTAGAGATACATCCCAT
CAACCATCCCCCGTTGACCGGCCTCCTTCGAAAATCTTTATTCGATTTCA
CTGTTAGCTCAAGTGCTTGGAGATCACTTGGTTGGCGTCCGCCTCAGCAA
GAGCATGTGCGATGGCCACGATGTTTTTGATCTGGCTCAAGTTAGCAAGT
GAGGGGTGAACAATGAACAGCAGCGCTCTGGTACCCACCCCGCGTCCATT
TAGAGCCAAAAACTACAATTGTCGAAGGTTGTTCCTCACCACAACAGATC
CTTGCTTCGTACATGCCCTGGACAGAAATGTTGACCAGAGATCTCTGCGA
ACTGACTCGTTGAATTCTCATAGTCAATGGTCAAATGGGTCCGGGCGAGA
TTGCATCATCAAACTAGATACCCCGATTCAACGTCAAGGAAATGCCTCCT
ACCATTCCAGCTTCCGGAGGAAGATGGTCACAAGGGGATTTTGAGTATTG
TGGTAAGATGCACGCTACTCCATGAACGTAGCAATCTCATCCAAGCGAAG
CATGCCATCAAAATGTTTGTCGATCTTGAATACTGCTTCAAGCTGTTGCT
CAAGCGCATTCGAATCGCCGTGGTCGACTTGGCGTTTCCATCGATTACGT
TGTCGAACGGTACCGTCGGTATCAGACCCAGGGTGGTTTTCGCCAATGAG
AAGAGCAAGGTCTTAGTTTCTGGAGGGAACTAAAAGCAGTTGAATGATTC
GAGTATTCAGTGAGCAAGCGGTGTTGGTGCTACAGATAATCCAGAAACTG
CCTTTACTATCTATACTTCTCTATTGATTCCCAAACCCTAATGCCAAGAT
ACGCTAAGCCATTCCTGGAACGGATCCGGAATATCTTGGTCCAAGATATT
GTAACGTATCGTATTCATTTTAGCCAAGCCTCTTGACCCTGTTTATTACG
CGTTAGGCTTTCGCCCCAGGTACCACCCCGCAATTTCCTCTCCCGGCCTC
AATGCCTCCGCCATAATCTCGGAGGAACCGCCTGTCCTACGATCATGACC
GATGGCACCTAACTTACCCCAATCTACGCTTGACCTTATCCATGATATGA
TCGTCGATGGAAAGCTCTCTTTGTCCCAGATGGCTGCAAATGCCGGCTGC
AGCAAGCCTACAATCATTGCTATTCGCTCTAATCTTCGCATGTTCGGCAG
TGTCAGAGCACCACCGGTCAAAAGTGGACGTCCACGTCGTCTTACAACGG
CGATGATGGACGCTCTTTGTGACCACTTACTGGAAAAGCCTGGTCTATAT
CTTCCCGAAATGCAGGTTTTTTTGCTAGACGAATTCAGTCTGCATGTCTC
AACTTCTACTATTAGCAATGCGCTTCATCGCAAAGGATGGTCGAAAAAGA
TAGCGCGACAAAAAGCAAAAGAGCGAAATGCCGATTTACGTGATGAATAT
TTCCACGATATTGCGGAATTCCGATCGTATCAGCTTATATTCGTTGACGA
ATCCGGATGTGATAAACGGATAGGCTTTCGGAGAACAGGCTGGTCGCCCC
TGGGTATAACCCCAGTCCAGGTATCAAAATTCCATCGCGATCAGCGATAC
CAGATACTTCCAGCGTACACCCAAGATGGTATTCTTCTTTCTCGTGTGTT
CCAGGGCTCCACTGATGGCTTGTGGTTTGAGGATTTTATTGAGGAACTTC
TTCAGCATTGCCAACCATACCCGGCCGCTAAGTCAATTATCGTCATGGAT
AATGCCTCTATTCATCGATCTGGACGGATACAGGATATGTGTTTGAAAGT
GGGCGTCAAATTGATATATTTACCACCATATTCGCCAGATTTGAATCCAA
TTGAAGAGTTCTTTGCCGAGCTAAAAGGATTCATCCGACAACATTGGCAG
ACATATGAAGATAATCGCGACCAGGGTTTTGCTTCCTTTCTTGAATGGTG
TGTGGACAAGGTCGGTGCCAAAGAACAGAGTGCTAGAGGGCATTTCAGGC
ACGCAGGTCTAACAATAGAAGAGCCATAGCATCTATCATGTAGTCTTTCC
GGCAGTGTCGCTACTTCTTTCTCTGATTGTTTCCTGGGGCCCAGCCTTGA
AACTACGCTAAGCTAGTTTTAGAACGGAACTGGAGAATAGCCAATCCGTG
TATATGCCATATCACATTTTTGTTCATTAGCTTCCGATCTATGTATACTT
CATCTTAATACTTATGAACTATGTCTAG back to topCoding sequence (CDS) from alignment at ch3:661108..666485- >KJC3_013016-T1 ID=KJC3_013016-T1|Name=KJC3_013016-T1|organism=Aspergillus niger KJC3|type=CDS|length=1176bp|location=Sequence derived from alignment at ch3:661108..666485- (Aspergillus niger KJC3)
GATTTTATTGAATGGCACCTAACTTACCCCAATCTACGCTTGACCTTATC
CATGATATGATCGTCGATGGAAAGCTCTCTTTGTCCCAGATGGCTGCAAA
TGCCGGCTGCAGCAAGCCTACAATCATTGCTATTCGCTCTAATCTTCGCA
TGTTCGGCAGTGTCAGAGCACCACCGGTCAAAAGTGGACGTCCACGTCGT
CTTACAACGGCGATGATGGACGCTCTTTGTGACCACTTACTGGAAAAGCC
TGGTCTATATCTTCCCGAAATGCAGGTTTTTTTGCTAGACGAATTCAGTC
TGCATGTCTCAACTTCTACTATTAGCAATGCGCTTCATCGCAAAGGATGG
TCGAAAAAGATAGCGCGACAAAAAGCAAAAGAGCGAAATGCCGATTTACG
TGATGAATATTTCCACGATATTGCGGAATTCCGATCGTATCAGCTTATAT
TCGTTGACGAATCCGGATGTGATAAACGGATAGGCTTTCGGAGAACAGGC
TGGTCGCCCCTGGGTATAACCCCAGTCCAGGTATCAAAATTCCATCGCGA
TCAGCGATACCAGATACTTCCAGCGTACACCCAAGATGGATTTTATTGAA
TGGCACCTAACTTACCCCAATCTACGCTTGACCTTATCCATGATATGATC
GTCGATGGAAAGCTCTCTTTGTCCCAGATGGCTGCAAATGCCGGCTGCAG
CAAGCCTACAATCATTGCTATTCGCTCTAATCTTCGCATGTTCGGCAGTG
TCAGAGCACCACCGGTCAAAAGTGGACGTCCACGTCGTCTTACAACGGCG
ATGATGGACGCTCTTTGTGACCACTTACTGGAAAAGCCTGGTCTATATCT
TCCCGAAATGCAGGTTTTTTTGCTAGACGAATTCAGTCTGCATGTCTCAA
CTTCTACTATTAGCAATGCGCTTCATCGCAAAGGATGGTCGAAAAAGATA
GCGCGACAAAAAGCAAAAGAGCGAAATGCCGATTTACGTGATGAATATTT
CCACGATATTGCGGAATTCCGATCGTATCAGCTTATATTCGTTGACGAAT
CCGGATGTGATAAACGGATAGGCTTTCGGAGAACAGGCTGGTCGCCCCTG
GGTATAACCCCAGTCCAGGTATCAAAATTCCATCGCGATCAGCGATACCA
GATACTTCCAGCGTACACCCAAGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013016-T1.utr3p1 | KJC3_013016-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013016-T1.utr5p1 | KJC3_013016-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR025959 |
| DBxref | PFAM:PF13592 |
| DBxref | PFAM:PF13358 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:661108..666485 - |
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