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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:839235..840935+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013020-T1 ID=KJC3_013020-T1|Name=KJC3_013020-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1701bp|location=Sequence derived from alignment at ch3:839235..840935+ (Aspergillus niger KJC3)
CGGATCCTCACGGCTTCAAACCTCCAACACACAATATTCAACCTTGCTTA
GATTCAACCAATATTGAAGCTATTCAAATATATGGAGTGTTTATCGCGAG
ACGAAAGACTAGCGCTCGCTTGTGAAGCTTATGAAAAGGGCCAATACGCT
CCTAAACAGGCATGCGCGGATGCTTTTGATGTCAAGATAAGCACTTTCAA
AGATCGATTACGAGGCATCAAACCTCGTGCTAAAATCAATGCGAATTGCA
GAAAATTATTTGATACTGAAGAAACTGTATTAAAGCAGAAAATTCTTGAT
ATGGACTCACGTGGTTATCCTCTTACTATTGCAAAAGTCCGACATCTTGC
TAGAATACTGCTGTCTTCGAAGTTAAAGCAACCAAATACTGCACTTATCA
GCAAACGCTGGGTTCAACGATTAATTCGCCGTCATCAAGCTGAATTGAAG
TCAAAATATACACAACGTTTTGATTATCAACGTGCGCAATGTGAAGATCC
GAAGCTTATTAGAAAGTGGTTTGATTTGGTGAGAAATACTGTCCAAAAGT
ATGGGATTGTTGAACAAGACTTTTATAATATGGATGAAACTGGTTTCCAA
ATGGGTGTCGCTTCAACTGCAAAGGTTGTATGCGGTATAGAGTCTCGTCA
AACAAACGCACGCTCAATTCAACCAGGAAATCGTGAATGGGTTATTTCAA
TCGTGACAATTAATGCTGCAGGTAGTATACTACCTCCGCAAATCATCTTC
GCTGGCAAGATGCAGCAGGAACAGTGGTTTGAAGATATCCCCAAAGACTG
GCGCATCAGTGTAAGCGAAAACGGATGGACAACTGATAAGCTCAGTTTTG
AATGGCTTCAATTCTTTGATCAATATACGGCTTCAAAAACAATTGGCCAG
TATCGTCTCCTTATTCATGACGGCCACGGAAGCCATTCAACTATTGAATT
CAATCAATATTGCAAAGAAAGAAGAATTATTCCTTGATATATGCCGCCTC
ATTCTTCTCATAAACTTCAACCGCTTGATGTCGCTTGTTTTGCGCCATTG
AAGATTCTATATGGTCGTCGAATTAATGATGCTGCACAGAAAGGCATTCA
ACATATTGATAAATGTGCTTTTTTATATCATTATCAACGAGTACATTACA
AGGCCTTTAATAAAGCAAATATAAAACAAGCTTTTGCATCTACTGGTCTT
CTTCAATACAATCCAGATAGAGTACTTCATACTCTGAAAGCTTTTGATCA
AACACCTTCTCCGCCTTCAACTTCATCATCTAATCAATCAATATATCTCG
GTAAAACGCCTTTAAATCTTTATCAACTGAATCATCAAAAGGCAGAGATA
CGGGCACTTCAGGAGTCAGGATTATCTTCATTTATTGCAGACCAAGCACT
TGAAAAGATCTATAAGGGTGCGGAAATGGCAATGCAGAATACTGTACTAC
TTCAGCAAGAATTACAACAACTCCACGCAGTCAACCAATACAAGAAAGAT
AAGTCAAAGCCTTCACGACGATATCTACAGGAAGGAGGTACTCTAGATGG
CCAAACTGCACGTCATATTGCTCAAATAAAAGATACTGAAGCAGCAAAGG
ATCAGGCGAATTAAACTACTCAACGTCGACCATCTCGCTGCAGCAACTGT
AATAGAGAAGGTCACAATCGCCTCAAATGTCTGGATAGAGTCAACGCCTA
G back to topCoding sequence (CDS) from alignment at ch3:839235..840935+ >KJC3_013020-T1 ID=KJC3_013020-T1|Name=KJC3_013020-T1|organism=Aspergillus niger KJC3|type=CDS|length=906bp|location=Sequence derived from alignment at ch3:839235..840935+ (Aspergillus niger KJC3)
ATGGAGTGTTTATCGCGAGACGAAAGACTAGCGCTCGCTTGTGAAGCTTA
TGAAAAGGGCCAATACGCTCCTAAACAGGCATGCGCGGATGCTTTTGATG
TCAAGATAAGCACTTTCAAAGATCGATTACGAGGCATCAAACCTCGTGCT
AAAATCAATGCGAATTGCAGAAAATTATTTGATACTGAAGAAACTGTATT
AAAGCAGAAAATTCTTGATATGGACTCACGTGGTTATCCTCTTACTATTG
CAAAAGTCCGACATCTTGCTAGAATACTGCTGTCTTCGAAGTTAAAGCAA
CCAAATACTGCACTTATCAGCAAACGCTGGGTTCAACGATTAATTCGCCG
TCATCAAGCTGAATTGAAGTCAAAATATACACAACGTTTTGATTATCAAC
GTGCGCAATGTGAAGATCCGAAGCTTATTAGAAAGTGGTTTGATTTGGTG
AGAAATACTGTCCAAAAGTATGGGATTGTTGAACAAGACTTTTATAATAT
GGATGAAACTGGTTTCCAAATGGGTGTCGCTTCAACTGCAAAGGTTGTAT
GCGGTATAGAGTCTCGTCAAACAAACGCACGCTCAATTCAACCAGGAAAT
CGTGAATGGGTTATTTCAATCGTGACAATTAATGCTGCAGGTAGTATACT
ACCTCCGCAAATCATCTTCGCTGGCAAGATGCAGCAGGAACAGTGGTTTG
AAGATATCCCCAAAGACTGGCGCATCAGTGTAAGCGAAAACGGATGGACA
ACTGATAAGCTCAGTTTTGAATGGCTTCAATTCTTTGATCAATATACGGC
TTCAAAAACAATTGGCCAGTATCGTCTCCTTATTCATGACGGCCACGGAA
GCCATTCAACTATTGAATTCAATCAATATTGCAAAGAAAGAAGAATTATT
CCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013020-T1.utr5p1 | KJC3_013020-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013020-T1.utr3p1 | KJC3_013020-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004875 |
| DBxref | InterPro:IPR006600 |
| DBxref | PFAM:PF03221 |
| DBxref | PFAM:PF03184 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:839235..840935 + |
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