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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1013124..1014164+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013027-T1 ID=KJC3_013027-T1|Name=KJC3_013027-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1041bp|location=Sequence derived from alignment at ch3:1013124..1014164+ (Aspergillus niger KJC3)
CTTAACTGGGGGCTGGCTGGCCCACCTCTGCCCCATACTCTTATCGCGAC
GCACTTGTGAATACTACCCTCATCATCTTGACCTCGTCATCTTAACCTCC
TCATCTCAACCTCCTCATCTCAGCCTCATCAAGCATAGCAAATCAATCGA
ACCGTCCACCTATCTACACCGTTTCTCCAGATTTTGAGATACTAGAACGC
TTACCATGGAACGCCTAAGAAACGCAACAAACTCAATTTTTAATTATGGA
CAAACTGTTGCTCGAGAACATACAACCGCCTTAGTCGCTAGTGGTACCGG
ACTTGCTCCCGCTACAGCACCGATCACCGGCCCTGCAATATTAGGTGCTG
TTGGTTTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTGCTGCAGCATGG
CAGTCTTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTTGCCACCCTACA
GGGAGCTGCAATGGGAGGCGCTGCTGCGGGGACATTTACAACTGCTTCGA
ACATTGGAATTGGGATGGTGGGATCCGTGGCAGTTGGAAAACAATGGACT
GATATAAAGAAAAGACTATGGATGAAACATGATAGCGAACATTTTGAGGA
AGCTGGATATTATGGTAATACATAAATGCCTACCGGTATGCTGCTCAAGG
CTAACATGAATAAAGACCAGCTGAAGATAACAAAGACGTGGCAAACAACC
CACAAATGCCTGACGTTGATGATTTGCTAGGCACAGAATTCGCGAAATTT
CTCGAGATCGACATGTCTTGAATAGAAGTGTCATATGTACTGCTGTACAT
GTGTGAGAGATCCAACGTGATTTTCTGGGAGGATCTCTGCTGGCTCGGGA
AAATTCTAGTGTGGGAACACGCGCTTGTACGCGCTGGTACAGGCTCTGTA
GAATATGCTGAGTCATTGGACACCCATTACCACTTAGTATAGGAACCTGT
ACCCGAGGTCATCAGATAATTTATGAAAGACGATTAGTGTATCTCGTGAT
AAGGGTTTCAAAGAAAGTCGAAGACTATAAACATTTGCACC back to topCoding sequence (CDS) from alignment at ch3:1013124..1014164+ >KJC3_013027-T1 ID=KJC3_013027-T1|Name=KJC3_013027-T1|organism=Aspergillus niger KJC3|type=CDS|length=948bp|location=Sequence derived from alignment at ch3:1013124..1014164+ (Aspergillus niger KJC3)
ATGGAACGCCTAAGAAACGCAACAAACTCAATTTTTAATTATGGACAAAC
TGTTGCTCGAGAACATACAACCGCCTTAGTCGCTAGTGGTACCGGACTTG
CTCCCGCTACAGCACCGATCACCGGCCCTGCAATATTAGGTGCTGTTGGT
TTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTGCTGCAGCATGGCAGTC
TTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTTGCCACCCTACAGGGAG
CTGCAATGGGAGGCGCTGCTGCGGGGACATTTACAACTGCTTCGAACATT
GGAATTGGGATGGTGGGATCCGTGGCAGTTGGAAAACAATGGACTGATAT
AAAGAAAAGACTATGGATGAAACATGATAGCGAACATTTTGAGGAAGCTG
GATATTATGACCAGCTGAAGATAACAAAGACGTGGCAAACAACCCACAAA
TGCCTGACGTTGATGATTTGCTAGATGGAACGCCTAAGAAACGCAACAAA
CTCAATTTTTAATTATGGACAAACTGTTGCTCGAGAACATACAACCGCCT
TAGTCGCTAGTGGTACCGGACTTGCTCCCGCTACAGCACCGATCACCGGC
CCTGCAATATTAGGTGCTGTTGGTTTCAGCGCTGCAGGGCCTGTTGCGGC
TTCTTTTGCTGCAGCATGGCAGTCTTCAATCGGGGTAGTTCAAGCTGGGA
GTCTGTTTGCCACCCTACAGGGAGCTGCAATGGGAGGCGCTGCTGCGGGG
ACATTTACAACTGCTTCGAACATTGGAATTGGGATGGTGGGATCCGTGGC
AGTTGGAAAACAATGGACTGATATAAAGAAAAGACTATGGATGAAACATG
ATAGCGAACATTTTGAGGAAGCTGGATATTATGACCAGCTGAAGATAACA
AAGACGTGGCAAACAACCCACAAATGCCTGACGTTGATGATTTGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013027-T1.utr5p1 | KJC3_013027-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013027-T1.utr3p1 | KJC3_013027-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009311 |
| DBxref | PFAM:PF06140 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1013124..1014164 + |
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