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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2282468..2283854- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013037-T1 ID=KJC3_013037-T1|Name=KJC3_013037-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1387bp|location=Sequence derived from alignment at ch3:2282468..2283854- (Aspergillus niger KJC3)
CCTGCGCCCATAATCCCCCTTCCCTTTCGCCTCCCGACACCACCTTTTTC
GACAACCTCACCGTTCGCAGGAAGTGCAGCCGCCCCATTTCCAGCAGTCA
AGATGGCCCGTCGTCCCGCGAGATGTTACCGCTACTGCAAGAACAAGGTG
CGTTCGACCGTTTGATAGATTTTTGTGCGTTTTTGTGGATTTTTTTGGAC
GGGATTTTGTCTTGTGGGGAGCATTTGTCAACCAACACCAACGACGATAC
GCGCTACGGAGAGATGCTCAGGATGGATATCATGTCTTGCCCGACGATGG
AAGAAAGAAAGATGTACCAGACAAGGATGGAGATGAATACTGACATGATC
CTCGAATGACAGCCCTACCCTAAGTCCCGGTTCAACCGTGGTGTTCCCGA
CCCCAAGATCCGTATCTTCGATCTGGGACGTAAGAAGGCCAACGTCGATG
ACTTCCCTCTTTGCGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCC
TCCGAGGCCCTCGAAGCCGCCCGTATCTGTGCCAACAAGTATGCCGACCC
GCCGATTCCACTACGCCCAGCCATGATGTACTAACGCAGATATTCAGGTA
CCTCGTGAAGATCGCCGGTAAGGAAGGTTTCCACCTCCGTGTCCGTGTGC
ACCCCTTCCACGTCATCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCC
GATCGTCTCCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTAC
CGTTGCCCGTGTGAACATTGGCCAGATCATTCTGTCCGTCCGCACCCGTG
ACACCAACCGTGCTGCTGCCATCGAGGCTCTCCGCCGCTCCATGTACAAG
TTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGTTTCACTCC
CGTCCGCCGCGAGGACTACGTCCAGCTCCGCCAGGAGGGCAAGCTCAAGC
AGGATGGTGCCTACGTCCAGTTCCTGCGTGGCCACGGTCTCATCGAGGAG
AACATGAAGCGTTTCCCCGACGCCTACGAGAACGTTTCTCAGGCTTAGAT
GGATGTTTAGCGCTTTAGGACACGAAAAAAAGATTTATTGAACTATTCCC
ACTTTTCATGTCCTGTTTGTTATCCTTGATGTCATTTAGTCACCGTATGG
GGCGGAGTTATTTAACGCGGATTTCCTCGGCTTGCATGGTTGCACAGTAG
TATGATACCGTAGGACGATTTCCCACAGTAGTGCGGCGTAGTTCTGTCAG
CTTTCAGTTATGACAACCAGATGGTCGCCTGTTTTGCTTTTAAATTGATT
TCATGGGGTCCGGAATGATATCATATCTGTGCTACGATTGACCCAAGGGA
TTACAAAACGTTCTAGTCGTAACACTGTTGAACAAAC back to topCoding sequence (CDS) from alignment at ch3:2282468..2283854- >KJC3_013037-T1 ID=KJC3_013037-T1|Name=KJC3_013037-T1|organism=Aspergillus niger KJC3|type=CDS|length=2016bp|location=Sequence derived from alignment at ch3:2282468..2283854- (Aspergillus niger KJC3)
GTACCTCGTGAAGATCGCCGGTAAGGAAGGTTTCCACCTCCGTGTCCGTG
TGCACCCCTTCCACGTCATCCGTATCAACAAGATGTTGTCTTGCGCCGGT
GCCGATCGTCTCCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGG
TACCGTTGCCCGTGTGAACATTGGCCAGATCATTCTGTCCGTCCGCACCC
GTGACACCAACCGTGCTGCTGCCATCGAGGCTCTCCGCCGCTCCATGTAC
AAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGTTTCAC
TCCCGTCCGCCGCGAGGACTACGTCCAGCTCCGCCAGGAGGGCAAGCTCA
AGCAGGATGGTGCCTACGTCCAGTTCCTGCGTGGCCACGGTCTCATCGAG
GAGAACATGAAGCGTTTCCCCGACGCCTACGAGAACGTTTCTCAGGCTTA
GCCCTACCCTAAGTCCCGGTTCAACCGTGGTGTTCCCGACCCCAAGATCC
GTATCTTCGATCTGGGACGTAAGAAGGCCAACGTCGATGACTTCCCTCTT
TGCGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCCCT
CGAAGCCGCCCGTATCTGTGCCAACAAATGGCCCGTCGTCCCGCGAGATG
TTACCGCTACTGCAAGAACAAGGTACCTCGTGAAGATCGCCGGTAAGGAA
GGTTTCCACCTCCGTGTCCGTGTGCACCCCTTCCACGTCATCCGTATCAA
CAAGATGTTGTCTTGCGCCGGTGCCGATCGTCTCCAGACCGGTATGCGTG
GTGCCTTCGGTAAGCCCCAGGGTACCGTTGCCCGTGTGAACATTGGCCAG
ATCATTCTGTCCGTCCGCACCCGTGACACCAACCGTGCTGCTGCCATCGA
GGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATCG
TCTCCAAGAACTGGGGTTTCACTCCCGTCCGCCGCGAGGACTACGTCCAG
CTCCGCCAGGAGGGCAAGCTCAAGCAGGATGGTGCCTACGTCCAGTTCCT
GCGTGGCCACGGTCTCATCGAGGAGAACATGAAGCGTTTCCCCGACGCCT
ACGAGAACGTTTCTCAGGCTTAGCCCTACCCTAAGTCCCGGTTCAACCGT
GGTGTTCCCGACCCCAAGATCCGTATCTTCGATCTGGGACGTAAGAAGGC
CAACGTCGATGACTTCCCTCTTTGCGTTCACCTCGTCTCCAACGAGTACG
AGCAGCTGTCCTCCGAGGCCCTCGAAGCCGCCCGTATCTGTGCCAACAAA
TGGCCCGTCGTCCCGCGAGATGTTACCGCTACTGCAAGAACAAGGTACCT
CGTGAAGATCGCCGGTAAGGAAGGTTTCCACCTCCGTGTCCGTGTGCACC
CCTTCCACGTCATCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGAT
CGTCTCCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTACCGT
TGCCCGTGTGAACATTGGCCAGATCATTCTGTCCGTCCGCACCCGTGACA
CCAACCGTGCTGCTGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTC
CCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGTTTCACTCCCGT
CCGCCGCGAGGACTACGTCCAGCTCCGCCAGGAGGGCAAGCTCAAGCAGG
ATGGTGCCTACGTCCAGTTCCTGCGTGGCCACGGTCTCATCGAGGAGAAC
ATGAAGCGTTTCCCCGACGCCTACGAGAACGTTTCTCAGGCTTAGCCCTA
CCCTAAGTCCCGGTTCAACCGTGGTGTTCCCGACCCCAAGATCCGTATCT
TCGATCTGGGACGTAAGAAGGCCAACGTCGATGACTTCCCTCTTTGCGTT
CACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCCCTCGAAGC
CGCCCGTATCTGTGCCAACAAATGGCCCGTCGTCCCGCGAGATGTTACCG
CTACTGCAAGAACAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013037-T1.utr3p1 | KJC3_013037-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013037-T1.utr5p1 | KJC3_013037-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092648Q0 |
| DBxref | InterPro:IPR018255 |
| DBxref | InterPro:IPR016180 |
| DBxref | InterPro:IPR036920 |
| DBxref | InterPro:IPR001197 |
| DBxref | PFAM:PF00252 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2282468..2283854 - |
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