You are here

Home

KJC3_013073-T1, KJC3_013073-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_013073-T1
Unique NameKJC3_013073-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:3347133..3348694-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_013073-T1 ID=KJC3_013073-T1|Name=KJC3_013073-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1562bp|location=Sequence derived from alignment at ch6:3347133..3348694- (Aspergillus niger KJC3)
GTCTGACAGGCTAACACCGCTCGGGCTAAGGTCCCTGCTGCTCTTTTCCC
TTTATTGCGACTTAACCTCTAAGCCATTCCCTTGCATCACGTTATCTCAC
TGACCGACCTCTGACTAAGGCGCTTCGCCTCCGCCGCCTCCCCTCATTCA
CCTCCTCTCCTGACTACTTAAGCCTTCTCTTCCTTCCTCTCACTACCAAC
CCTCCTTCATCCCTCATACCTCTCATCCTACCACTCACCTTTCGCGCATC
GCCATCTGCGATCCTCCCCACAACACTCCACCTAGATACATACACCATTA
ACTGCGCTTCTACAACATGCAGATCTTCGTTAAGACCCGTGAGTATTCCT
AACCATCTCTCAAGCTTAGCATCAGGAATCCATCATCTGACTGTTTGTTT
CCATCTAGTCACCGGCAAGACAATCACCCTCGAGGTCGAGTCCAGCGATA
CCATCGACAACGTCAAGACCAAGATCCAGGATAAGGAGGGCATCCCTCCC
GACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCAC
GCTTAGTGACTACAACATCCAGAAGGAGTCTACTCTCCATCTTGTCCTCC
GCCTGCGTGGTGGTATGCAGATTTGTAAGTTGTCCTGAACTCTATTTGCC
ACACTGTTGGCCACCTTCACTTGGACCATATACTGACCTCATATTAGTCG
TCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGAC
ACCATCGACAATGTGAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCC
GGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGTA
CCCTGTCTGACTACAACATTCAAAAGGAATCCACCCTTCACCTCGTCCTT
CGTCTGCGTGGTGGTATGCAGATCTTCGTCAAGACTCTCACGGGAAAGAC
GATCACATTGGAAGTTGAATCTTCCGACACAATTGATAACGTTAAGACCA
AGATTCAAGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTTTGATCTTC
GCTGGTAAGCAGTTGGAGGATGGCCGTACCTTGTCCGACTACAACATCCA
GAAAGAATCCACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTATGCAGA
TCTTCGTGAAGACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAGAGC
TCGGATACCATTGATAACGTCAAGACTAAGATTCAAGATAAGGAGGGCAT
TCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATG
GACGTACGCTCTCCGATTACAACATCCAGAAGGAGAGCACTCTGCACCTG
GTGCTCCGTCTCCGTGGCGGAAACTAATGCCTTATTTTGATCTTTCTTCT
TTAGCACGGCTCATCTACGGTTGAGTGGCCTGCATGGCGTTGGGACGGTT
GTTTTCATCGGTTTTTATGATACGGATAAATTGGGCATACCTTAGGGTCA
CCATCTTCCATGGTGCCTTGCGTCATTCTTTTACCTAGGAATCAATTCAA
TAATCATATTCC
back to top

Coding sequence (CDS) from alignment at ch6:3347133..3348694-

>KJC3_013073-T1 ID=KJC3_013073-T1|Name=KJC3_013073-T1|organism=Aspergillus niger KJC3|type=CDS|length=2754bp|location=Sequence derived from alignment at ch6:3347133..3348694- (Aspergillus niger KJC3)
TCGTCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCT
GACACCATCGACAATGTGAAGACCAAGATTCAGGACAAGGAGGGCATTCC
CCCGGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCC
GTACCCTGTCTGACTACAACATTCAAAAGGAATCCACCCTTCACCTCGTC
CTTCGTCTGCGTGGTGGTATGCAGATCTTCGTCAAGACTCTCACGGGAAA
GACGATCACATTGGAAGTTGAATCTTCCGACACAATTGATAACGTTAAGA
CCAAGATTCAAGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTTTGATC
TTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCTTGTCCGACTACAACAT
CCAGAAAGAATCCACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTATGC
AGATCTTCGTGAAGACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAG
AGCTCGGATACCATTGATAACGTCAAGACTAAGATTCAAGATAAGGAGGG
CATTCCCCCGGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAG
ATGGACGTACGCTCTCCGATTACAACATCCAGAAGGAGAGCACTCTGCAC
CTGGTGCTCCGTCTCCGTGGCGGAAACTAATCACCGGCAAGACAATCACC
CTCGAGGTCGAGTCCAGCGATACCATCGACAACGTCAAGACCAAGATCCA
GGATAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGAA
AGCAGCTGGAGGATGGCCGCACGCTTAGTGACTACAACATCCAGAAGGAG
TCTACTCTCCATCTTGTCCTCCGCCTGCGTGGTGGTATGCAGATTTATGC
AGATCTTCGTTAAGACCCTCGTCAAGACCCTGACCGGAAAGACCATCACC
CTTGAGGTGGAGTCTTCTGACACCATCGACAATGTGAAGACCAAGATTCA
GGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGAA
AGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATTCAAAAGGAA
TCCACCCTTCACCTCGTCCTTCGTCTGCGTGGTGGTATGCAGATCTTCGT
CAAGACTCTCACGGGAAAGACGATCACATTGGAAGTTGAATCTTCCGACA
CAATTGATAACGTTAAGACCAAGATTCAAGACAAGGAAGGCATCCCCCCG
GACCAGCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTAC
CTTGTCCGACTACAACATCCAGAAAGAATCCACTCTTCACCTTGTCCTTC
GTCTCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACG
ATTACGCTGGAGGTGGAGAGCTCGGATACCATTGATAACGTCAAGACTAA
GATTCAAGATAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCG
CTGGTAAGCAGTTGGAAGATGGACGTACGCTCTCCGATTACAACATCCAG
AAGGAGAGCACTCTGCACCTGGTGCTCCGTCTCCGTGGCGGAAACTAATC
ACCGGCAAGACAATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAA
CGTCAAGACCAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGC
GTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACGCTTAGTGAC
TACAACATCCAGAAGGAGTCTACTCTCCATCTTGTCCTCCGCCTGCGTGG
TGGTATGCAGATTTATGCAGATCTTCGTTAAGACCCTCGTCAAGACCCTG
ACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGACAA
TGTGAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGC
GTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGAC
TACAACATTCAAAAGGAATCCACCCTTCACCTCGTCCTTCGTCTGCGTGG
TGGTATGCAGATCTTCGTCAAGACTCTCACGGGAAAGACGATCACATTGG
AAGTTGAATCTTCCGACACAATTGATAACGTTAAGACCAAGATTCAAGAC
AAGGAAGGCATCCCCCCGGACCAGCAGCGTTTGATCTTCGCTGGTAAGCA
GTTGGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAAGAATCCA
CTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTATGCAGATCTTCGTGAAG
ACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAGAGCTCGGATACCAT
TGATAACGTCAAGACTAAGATTCAAGATAAGGAGGGCATTCCCCCGGACC
AGCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACGCTC
TCCGATTACAACATCCAGAAGGAGAGCACTCTGCACCTGGTGCTCCGTCT
CCGTGGCGGAAACTAATCACCGGCAAGACAATCACCCTCGAGGTCGAGTC
CAGCGATACCATCGACAACGTCAAGACCAAGATCCAGGATAAGGAGGGCA
TCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGAT
GGCCGCACGCTTAGTGACTACAACATCCAGAAGGAGTCTACTCTCCATCT
TGTCCTCCGCCTGCGTGGTGGTATGCAGATTTATGCAGATCTTCGTTAAG
ACCC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBI4KJC3_013073Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013073-T1KJC3_013073-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013073-T1.cdsKJC3_013073-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013073-T1.utr3p1KJC3_013073-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013073-T1.exon3KJC3_013073-T1.exon3Aspergillus niger KJC3exon
KJC3_013073-T1.exon2KJC3_013073-T1.exon2Aspergillus niger KJC3exon
KJC3_013073-T1.exon1KJC3_013073-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013073-T1.utr5p1KJC3_013073-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF14560
DBxrefPFAM:PF00240
DBxrefPFAM:PF13881
DBxrefPFAM:PF11976
ProductUbiquitin
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:3347133..3348694 -
Powered by Drupal