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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4130705..4132449+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013082-T1 ID=KJC3_013082-T1|Name=KJC3_013082-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1745bp|location=Sequence derived from alignment at ch6:4130705..4132449+ (Aspergillus niger KJC3)
GCAACATCAATATCAGGGGTTGTGAGAGTCTTGCTACAGTACAAAGAATG
GCACCACCCCTGTCACCTGCAAAAAAGCAGCTTATCTGTGATATGACAAA
GAATGGCAAGTCTATATCCGATACAGCTTTTGCAGCGGAGTGTAGCAAGC
AGGCTGTGAAATATATTCGATCTAACCTACGTTTGTTCGGTACTCCTGGA
GCGCCCCCAAATCATGTAGGGCGGTGGTCAAACATTACTCCACCTATGCT
AGAAGCTCTACGGGACCATCTTCTTGTCAAGCCAGGATTATATCTTGATG
AAATGGCAGATTTCCTGTGGGATGTGTTCGAAGTCAATGTCTCAACAGAT
AGCATCAGCAGGGCTCTAAAGAAGATCAAATGGTCCAAAAAAACAATCCA
ACAAAAGGCAAAAGAGCAAAACCCGGAATTGCGAGATGAATATCGGCATG
ATATATTAGAATATCATTCATATCAGTTGGTTTATGTCGATGAGTCTGGG
TGTGATAAACGGTCAGGGATTAGAAGAACAGGCTGGTCGCCTCCTGGCAT
AACACCAGTTGAAAGATCCAAATTCCACCGTGGCCAACGTTACCAGATAC
TACCTGCGTATTCTCAGGATGGTATTGTTATATCTCACATTTATAAAGGA
TCAACAGATGCCGCTCTTTTTGAGAATTTTATTGAACAACTTCTTCACTA
CTGTGGGAGGTATCCAGGCCCAAGGTCTGTTCTGATCATGGATAACGCAT
CCTTTCATCGCTCTGAGAGAGTAGAGCAAATGTGCATGGAGAAAGGGGTC
CGATTAATATACCTACCACCGTATTCGCCTGATCTCAATCCCATCGAGGA
ATTTTTCGCGGAGCTGAAGGCTTTCATCAGGCGAAAGTGGACAGTCTATA
AAGAAGACCCAGAACAAGATTTCGGTGCATTCCTTGAACGATGTGTTGAT
ACTGTGGGCGCACGAAAACGAAGTGCAAGAGGCCATTTCCGGCATGCAGG
CGTGGCAATTGACGATGACTGAGTTTCCACCGGGGCACGTCTGCTGGTAT
GTGGCGACCTTGCTATTGGCGAGACTTAGCTGATATGATTATAGGCTAGA
GACTGAAATGTACATCCAAACCTTCATACACGTATAACCGTTCCGAAGTC
AAACCTATCCTGCGTCTTCGAATTGTTCCAAGGCAACACATATCCTCGTT
GGTTGCTCACAACCCTTACCCCTCCCTCTTTGAAATCAGTGGTATGATGT
GTGTGCCCGAACACCCAGACTTTCACTCCATCTGGCGTTTCTGATAGAAT
ATCGGTCCCAAAGGCAACACTCCAAGGGTTCTGGGCGTGTTGTGGGCTCG
ACGTCCTCTGGAGTAAAGGAGCGTGGTGTTTCACAACAAGAATGGACCTC
TTCTTACTCCGATTTTCTGCCATTTCATTTTCCTTATGTATCAAATGTAC
CTCTTCCAGTAACCAGGCGAGATCCAAATCATGGCTTGCATTATGGTCGT
CGACTGACCAGCCTTCGATTTTGTGGAAATTTTTGATCTTTGACCGGACG
ACATCCGTCAATTCATAAGGCACTTTTGACCAAAGTGTGCAGCCTAGGAT
AGTGACACAAGAGCCCAAGATATCAAACCGTTTCTGATGAAAGACAATTA
ATGGTCCACTTAAGGAAGGCTCCCGTTCAAGTTGTCCAGCCCTGCCGCGA
AAGTTCCATTGTAAAACTCATGATTTCTGGGTATCAGCAATATCT back to topCoding sequence (CDS) from alignment at ch6:4130705..4132449+ >KJC3_013082-T1 ID=KJC3_013082-T1|Name=KJC3_013082-T1|organism=Aspergillus niger KJC3|type=CDS|length=975bp|location=Sequence derived from alignment at ch6:4130705..4132449+ (Aspergillus niger KJC3)
ATGGCACCACCCCTGTCACCTGCAAAAAAGCAGCTTATCTGTGATATGAC
AAAGAATGGCAAGTCTATATCCGATACAGCTTTTGCAGCGGAGTGTAGCA
AGCAGGCTGTGAAATATATTCGATCTAACCTACGTTTGTTCGGTACTCCT
GGAGCGCCCCCAAATCATGTAGGGCGGTGGTCAAACATTACTCCACCTAT
GCTAGAAGCTCTACGGGACCATCTTCTTGTCAAGCCAGGATTATATCTTG
ATGAAATGGCAGATTTCCTGTGGGATGTGTTCGAAGTCAATGTCTCAACA
GATAGCATCAGCAGGGCTCTAAAGAAGATCAAATGGTCCAAAAAAACAAT
CCAACAAAAGGCAAAAGAGCAAAACCCGGAATTGCGAGATGAATATCGGC
ATGATATATTAGAATATCATTCATATCAGTTGGTTTATGTCGATGAGTCT
GGGTGTGATAAACGGTCAGGGATTAGAAGAACAGGCTGGTCGCCTCCTGG
CATAACACCAGTTGAAAGATCCAAATTCCACCGTGGCCAACGTTACCAGA
TACTACCTGCGTATTCTCAGGATGGTATTGTTATATCTCACATTTATAAA
GGATCAACAGATGCCGCTCTTTTTGAGAATTTTATTGAACAACTTCTTCA
CTACTGTGGGAGGTATCCAGGCCCAAGGTCTGTTCTGATCATGGATAACG
CATCCTTTCATCGCTCTGAGAGAGTAGAGCAAATGTGCATGGAGAAAGGG
GTCCGATTAATATACCTACCACCGTATTCGCCTGATCTCAATCCCATCGA
GGAATTTTTCGCGGAGCTGAAGGCTTTCATCAGGCGAAAGTGGACAGTCT
ATAAAGAAGACCCAGAACAAGATTTCGGTGCATTCCTTGAACGATGTGTT
GATACTGTGGGCGCACGAAAACGAAGTGCAAGAGGCCATTTCCGGCATGC
AGGCGTGGCAATTGACGATGACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013082-T1.utr5p1 | KJC3_013082-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013082-T1.utr3p1 | KJC3_013082-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR038717 |
| DBxref | PFAM:PF13358 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4130705..4132449 + |
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