|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4227727..4233745+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013088-T1 ID=KJC3_013088-T1|Name=KJC3_013088-T1|organism=Aspergillus niger KJC3|type=mRNA|length=6019bp|location=Sequence derived from alignment at ch6:4227727..4233745+ (Aspergillus niger KJC3)
GGAAAAATGTCGGGACGGGCCGAGACGCGAACCCCTGAACCGCCCGACCG
CGAGGAACACGAAAACTCGCCACCGCGATTGGTGAGGCCGAAACGCACGA
CACGACCACCAGCCCACTATGCTCAAGAGCAAGAGATCGACACTGAGCAG
AGAAACACGCGCTCCCAGCGAAAGAAGAAGAACCAGGGTAAGCCAGTCGC
CCAACGTGACGCGGCGACTTCGGCCGATTCCTCGGCAGAGAGCGAGGACT
CAGACACCTCCAAACTGGTGAAAGAGATTGTTAAGCTCAGGAGAGAAATC
AGACGACGAGATGAATTACACAAGGAGGAGCTCCACAGAGTCAAAGAAGA
GTTTGGTGCTGCCCTCGCAGAGTTTCGACATGAATTACAGACCCTGGCGA
ATCGACCCTCGACACCGCAACCCCACCCCGAGTCATGCGCTCAGAACAGC
CACGAGGAGATCCTTCGCGAAATCCAATCCTTGCGCATTGCAGTCAATCC
TTCGGGATCCCCGTCCTACGCAGATGTCGCCCGTACTCCTCCCACCAGCC
AACCGAGCAATATACGGACTCTCTCATCGTGGAACACGACACCGACCACC
TTCACCGACACGCTATATTGCACGATAGACACCTCGAAAATGGCAGATAC
TGAAAATGAGAGACCATCAGCAGGCCCAATTAGAACGGCAGTTGAGGCTG
AGATCCGGACAATGGAAAACTACACGAACTGGCGGTGCCGCGCTGTCACG
GTGGACCCGAAGAACACCAGCCGGATCAGAATTGCTTGCCGAGATGAGGC
CGAACACCAGCTGGTTAAGAAGGTGGCAGAAACCAAGGTCGGCACAGGAG
CCCGAGTGCTTCGTGACGAACTGTACCCGATCAAAGTTGACAGCGTCAAC
AGAACTGCAGTGCTTGATGAAAACGGTGATATCCGAGCAGGAGCTGCGGC
GGCCTTTGGCGAAGAGAACGAAGCTTCCATTGCTAAGATTGCATGGCTCA
GCAGAAAGGAGAATGCGAAGGCCTACGGGTCAATGGTCGTTTATCTGACC
AAAGGCAGTGATGCACGGACGCTCCTGGCCGACGGGTTCTTTCACGCTGG
GGGAGAATCCGGTGTGACCAGCACCTTTGAATACCGACCCCGACCGATGC
AATGCTACAATTGCCAAGAGATTGGGCATAAGGCGTTCCAGTGCAAGAAC
GCGCAGAAATGTGCAAAATGTGCCGTGGAGGGCCATCACCACAGTAGCTG
CGATCAAACGATTCCAAAGTGCATTCCATGCGGAGGCCCCCACGAATCGT
ACAGCAAAAACTGTCGGAAGCTCTACCCATCGCATCATGAATAAGACTCT
TCGAGTTATTCAACTGAATGTGAGAAAACAGGGGGCAGTACACGAGAGCT
TAATGAATGACGAAGAGACTCAAAACGCGGTGGCGTTAGCGATTCAGGAA
CCCCAAGCGAGGAGGATTCAAGGCCGGCTCTTGACCACCCCGATGGGACA
CCACAAATGGACGAAGATGGTTCCCTCTACCTGGAGGGAAGGCAGGTGGG
CAATTCGAAGCATGCTCTGGATTAACAAAGACGTCGAGGCGGAACAAGTA
CCAATAGAGTCCCCGGATCTCACGGCAGCGGTTATTAGGCTACCCGAGCG
ACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGACAATGCCTCAGCTT
TGGACGACACATGCAATCACCTACTCAACGCAATCACGAAAGTACGGCAA
GATACGGGTGCGGTGGTGGAGATTCTGATTATGGGAGACTTCAACCGGCA
GGACCAACTCTGGGGAGGAGACGACGTGTCTTTGAGAAGACAAGGTGAAG
CGGATCCAATCATCGACCTCATGAACGATTGTGCTCTCAGCAGTCTTCTC
AAACGAGGCACAAAGACATGGCATGGCGGAGGATACAGCGGGGACTGCGA
GTCGACGATCGACCTGGTCCTGGCCTCAGACAACCTAACAGACTCCGTAA
TTAAGTGTGCTATACTCGGGACGGAGCACGGCTCGGACCACTGCGCTATT
GAGACCGTCTTTGATGCGCCCTGGTCGCTCCCACAACATCAGGGACGACT
TCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGCCAGGATAGCGAACA
CTCTTGCCGCCACTCCGGCAGAGGGCACAGTGCAGCAGAAAACCGACCGG
CTCATGTCGGCGGTCTCGGAAGCGGTGCATGTGTTAACACCAAAGTCAAA
ACCATCACCACACGCGAAGCGGTGGTGGACCGCTGATTTAACGCAGCTCC
GTCACATACACACATACTGGAGAAATCACGCCCGCTCCGAGCGACGGGCG
GGACGAAAAGCACCCTACCTAGAGACAATAGCCCGAGGCGCGGCAAAACA
ATACCATGATGCCATCCGGCAACAAAAGAAAAAGCACTGGAATCAATTTC
TTGCCGACAATGATAACATATGGAAAGCCGCTAGATACCTGAAGTCGGGT
GAAGACGCAGCGTTCGGGAAGATCCCGCAGCTCCTCAGAGCGGATGGGAC
CACGACCACCGATCACACGGAGCAGGCAGAAGAATTGCTGACCAAATTCT
TCCCGCCCCTGCCAGACAACATTGACGATGAAGGGACTCGACCACAAAGA
GCGCCAGTTGAGATGCCTGCCATCATGATGGAGGAGATCGAACGACAGCT
GATGGCGGCAAAGTCTTGGAAGGCACCCGGCGAAGACGGTCTGCCAGCAA
TAGTCTGGAAGATGACCTGGCCCACGGTCAAGCACAGAGTCCTGGATCTC
TTCCAGGCGTCGCTGGAAGAAGGCACGTTGCCAAGACAGTGGAGACATGC
GAAGATCATACCGCTCAAAAAGCCGAACAAAGAGAACTACACTATTGCCA
AAGCATGGAGACCCATTTCACTCCTCGCGACGCTGGGCAAGATACTGGAG
TCCGTGGTAGCAGAAAGGATCTCGCACGCGGTGGAGACTTATGGGTTGCT
CCCGACCAGCCACTTCGGCGCCCGAAAGCAGCGGTCCGCGGAGCAAGCAC
TCGTACTCCTGCAAGAGCAAATCTACGCGGCGTGGCGTGGCCGACGGGTC
GTAAGCTTGATCAGCTTCGATGTCAAGGGAGCCTACAATGGAGTGTGCAA
AGAACGGTTGCTTCAGAGAATGAAAGCGCGGGGCATACCGGAGGATCTAC
TCCAGTGGGTTGAGGCGTTCTGCTCGGAACGAACGGCGACCATCCAAATC
AATGGGCAACTGTCTGAGACCCACAGCCTGCCACAGGCTGGACTGCCGCA
GGGCTCGCCGCTGTCCCCAATCCTGTTCCTCTTCTTCAACGCAGACCTCG
TACAACGTCAAATCGACGGCAAGGGAGGTGCGATTGCGTTCGTAGATGAT
TTTACCGCGTGGGTGACCGGACCAAGTGCGCAGAGCAACCGGGAAGGTAT
TGAGGGAATCATTAAAGAAGCGCTTGACTGGGAAAGACGAAGTGGGGCAA
CTTTTGAAGCAGAGAAAACAGCCATCACACACTTCACCCCCAAGGCTTAC
AAATTGGACCGGGAGCCCTTCACCATCAAGGGACAAACTGTTGAACCCAA
AGACCATGTCAAGATTCTGGGCGTCCTGATGGACACCAGTCTCAAATACA
AGGAACACATTGCAAGGGCAGCGTCCAAGGGCCTTGAGGCAGTGATGGAG
CTTCGACGACTCCGAGGTCTGTCCCCATCAACAGCGCGGCAGCTATTCAC
ATCGACAGTGGCCCCTGTAGTGGACTACGCCTCTAACGTCTGGATGCATG
CATTCAAAAATAAGGCCACGGGGCCGATCAACCGAGTCCAAAGGGTGGGA
GCGCAGGCAATCGTCGGGACCTTTCTCACTGTTGCAACCAGCGTCGCGGA
GGCAGAGGCTCACATTGCCACGGCGCAACACCGTTTTTGGAGGCGGGCCG
TGAAAATGTGGACCGACCTCCACACGCTCCCGGATACCAATCCGCTCCGC
CGAACTACAGCTCGGATCAGGAAATTCAGACGGTTTCATCGTTCGCCGCT
GTACCAGGTGGCAGACGCGCTGAAAAGCATTGATATGGAAACACTGGAGA
CTATTAACCCGTTTACATTAGCACCATGGGAGACACGTATGCAGACCGAT
GGCGAAGCCATGCCGGACCCACAGACCATACCGGGTGGGTCAATACAGAT
CGCGACCAGCAGCTCGGCACGGAACGGGATGGTAGGATTTGGGGTGGCGA
TCGAGAAGCAGCCACCTCGATATCGGAAACTAAAATTGAAGACCTTTTAC
ATGACACTGGGCGCAAGATCAGAACAGAATCCGTTCTCCGCAGAGCTAGC
GGCCATAGCTCATACATTGAACGGGCTGGTGGGACTGAAAGGTTTCAGGC
TCAGGTTGCTCACCAGCAACAAAGCTGCAGCCCTCACGTTACAGAACCCG
CGACAACAGTCAGGCCAGGAATTCGTCTGCCATACGTACAAGCTGATGAA
CAGACTACGGAGGAAAGGAAACCATATCAGGATACTTTGGGTCCCTATTA
GCGAAGACAACAAACTGCTGGGCCTAGCTAAGGAGCAGGCCCGAGCCGCA
ACCCACGAGGACGCTATCCCACAAGCACAGGTTCCCAGAATGAAGTCAAC
AACGCTGAATCTCGCACGATCCCAAGCAGTCACCACGAAAGCCTTGCCAG
AGGACGTAGGAAGACACGTCAAACGAGTGGATGCCGCACTCCCAGGAAAG
CACACCCGACAGCTGTATGATGGATTATCGTGGAAAGAAGCGACCGTGCT
GGCTCAACTTCGGACCGGCATGGCAAGATTAAATGGGTATCTCTACCGAA
TAAATGTCGCGCAGACAGACCAGTGTGCATGCGGACAAGCAAAAGAAACC
GTGGAGCATTTCCTCTTCCGGTGTCGGAAGTGGACTACGCAACGGATCGC
ACTGCTACAATGTACTCGAACTCAGCGGGGCAATCTCTCCCTCTGCCTGG
GCGGGAAATCGCCATCCGATGATCAGCAATGGACGCCGAACTTGGAGGCA
GTACGGTCCTCGATACGATTTGCCATCGCCACGGGCCGACTCGACGCCAC
CTAACCATATCAACCAAGACAATGACACCCTTCCCCTAACTAACCTACAC
CAACCGCCTTGTGCCACAGATGGTAGACGCGCTTCAACTGCCGAGGATAG
GATGTTGAACACTTGAAGAAGGGCCTTCAAGCCAGTCTACTAACAAATAT
ACAAACCCACAGGGAATCCTACGATAGTGACAGCTGAGAGGACATATACT
GACAGGATTTATGTATGGGCTCGAAGGAGACACCGCAGATGTACAATAGA
ACCGGTGTTGATAGATCAGTGATAGCTGCCCCTTCGGCTCAGCCGCCGGG
CGTTAATGAATTGTGTGTGTGTGTGTACCTTGTTGTCCTCCCAACATGCT
TGAAACATTGCTGAATACACCCCCGATCTTCCTCCGTAGTTGTCGTCGCA
GGTCTGTAGCCACGCGACACGGTCACCACAACGTGGCTTTGAGGTTCCTG
GAAGAGCCAAGCGTCATCGTCAATGCTGTGTGTCTATTTCAGACTCAGCC
TGAGAAATCAACCTCGCTCCATCATGTGGTTGACTGCGGATCTACGCAGC
TCGTGCAGCGGTTGCTGGCCCAGACAGCTCTGACCCCCAACATAACCGAC
CACTACGGCCGCAGTCCATTGGGTTGTGCGTCGCACGCAGGTAACTTGCC
AATGGTGGAGCTCCTGCTGGGTCGATCTGACGTGCGGGTGGATGCAGCAG
AGAAAAGCGAACAGCCACCGCTGTGGTCAGCTGCTTCGCAAGGACATATC
CAGGTCGTCGAGCGCCTGCTGCAGTGTGGAGATATTGATGTCAATCAGGG
ATGGGGGCCTTACTCGTCTCCGCTCCTGGCCGCAATTACGCGCGGTCATT
CCGATGTAGCCATGCGGTTGCTGAATTGCGTCCCGCGGCTGGATGTCAAT
GTCCGGACCTCATTAGGGG back to topCoding sequence (CDS) from alignment at ch6:4227727..4233745+ >KJC3_013088-T1 ID=KJC3_013088-T1|Name=KJC3_013088-T1|organism=Aspergillus niger KJC3|type=CDS|length=3768bp|location=Sequence derived from alignment at ch6:4227727..4233745+ (Aspergillus niger KJC3)
ATGAATAAGACTCTTCGAGTTATTCAACTGAATGTGAGAAAACAGGGGGC
AGTACACGAGAGCTTAATGAATGACGAAGAGACTCAAAACGCGGTGGCGT
TAGCGATTCAGGAACCCCAAGCGAGGAGGATTCAAGGCCGGCTCTTGACC
ACCCCGATGGGACACCACAAATGGACGAAGATGGTTCCCTCTACCTGGAG
GGAAGGCAGGTGGGCAATTCGAAGCATGCTCTGGATTAACAAAGACGTCG
AGGCGGAACAAGTACCAATAGAGTCCCCGGATCTCACGGCAGCGGTTATT
AGGCTACCCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGA
CAATGCCTCAGCTTTGGACGACACATGCAATCACCTACTCAACGCAATCA
CGAAAGTACGGCAAGATACGGGTGCGGTGGTGGAGATTCTGATTATGGGA
GACTTCAACCGGCAGGACCAACTCTGGGGAGGAGACGACGTGTCTTTGAG
AAGACAAGGTGAAGCGGATCCAATCATCGACCTCATGAACGATTGTGCTC
TCAGCAGTCTTCTCAAACGAGGCACAAAGACATGGCATGGCGGAGGATAC
AGCGGGGACTGCGAGTCGACGATCGACCTGGTCCTGGCCTCAGACAACCT
AACAGACTCCGTAATTAAGTGTGCTATACTCGGGACGGAGCACGGCTCGG
ACCACTGCGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCACAA
CATCAGGGACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGC
CAGGATAGCGAACACTCTTGCCGCCACTCCGGCAGAGGGCACAGTGCAGC
AGAAAACCGACCGGCTCATGTCGGCGGTCTCGGAAGCGGTGCATGTGTTA
ACACCAAAGTCAAAACCATCACCACACGCGAAGCGGTGGTGGACCGCTGA
TTTAACGCAGCTCCGTCACATACACACATACTGGAGAAATCACGCCCGCT
CCGAGCGACGGGCGGGACGAAAAGCACCCTACCTAGAGACAATAGCCCGA
GGCGCGGCAAAACAATACCATGATGCCATCCGGCAACAAAAGAAAAAGCA
CTGGAATCAATTTCTTGCCGACAATGATAACATATGGAAAGCCGCTAGAT
ACCTGAAGTCGGGTGAAGACGCAGCGTTCGGGAAGATCCCGCAGCTCCTC
AGAGCGGATGGGACCACGACCACCGATCACACGGAGCAGGCAGAAGAATT
GCTGACCAAATTCTTCCCGCCCCTGCCAGACAACATTGACGATGAAGGGA
CTCGACCACAAAGAGCGCCAGTTGAGATGCCTGCCATCATGATGGAGGAG
ATCGAACGACAGCTGATGGCGGCAAAGTCTTGGAAGGCACCCGGCGAAGA
CGGTCTGCCAGCAATAGTCTGGAAGATGACCTGGCCCACGGTCAAGCACA
GAGTCCTGGATCTCTTCCAGGCGTCGCTGGAAGAAGGCACGTTGCCAAGA
CAGTGGAGACATGCGAAGATCATACCGCTCAAAAAGCCGAACAAAGAGAA
CTACACTATTGCCAAAGCATGGAGACCCATTTCACTCCTCGCGACGCTGG
GCAAGATACTGGAGTCCGTGGTAGCAGAAAGGATCTCGCACGCGGTGGAG
ACTTATGGGTTGCTCCCGACCAGCCACTTCGGCGCCCGAAAGCAGCGGTC
CGCGGAGCAAGCACTCGTACTCCTGCAAGAGCAAATCTACGCGGCGTGGC
GTGGCCGACGGGTCGTAAGCTTGATCAGCTTCGATGTCAAGGGAGCCTAC
AATGGAGTGTGCAAAGAACGGTTGCTTCAGAGAATGAAAGCGCGGGGCAT
ACCGGAGGATCTACTCCAGTGGGTTGAGGCGTTCTGCTCGGAACGAACGG
CGACCATCCAAATCAATGGGCAACTGTCTGAGACCCACAGCCTGCCACAG
GCTGGACTGCCGCAGGGCTCGCCGCTGTCCCCAATCCTGTTCCTCTTCTT
CAACGCAGACCTCGTACAACGTCAAATCGACGGCAAGGGAGGTGCGATTG
CGTTCGTAGATGATTTTACCGCGTGGGTGACCGGACCAAGTGCGCAGAGC
AACCGGGAAGGTATTGAGGGAATCATTAAAGAAGCGCTTGACTGGGAAAG
ACGAAGTGGGGCAACTTTTGAAGCAGAGAAAACAGCCATCACACACTTCA
CCCCCAAGGCTTACAAATTGGACCGGGAGCCCTTCACCATCAAGGGACAA
ACTGTTGAACCCAAAGACCATGTCAAGATTCTGGGCGTCCTGATGGACAC
CAGTCTCAAATACAAGGAACACATTGCAAGGGCAGCGTCCAAGGGCCTTG
AGGCAGTGATGGAGCTTCGACGACTCCGAGGTCTGTCCCCATCAACAGCG
CGGCAGCTATTCACATCGACAGTGGCCCCTGTAGTGGACTACGCCTCTAA
CGTCTGGATGCATGCATTCAAAAATAAGGCCACGGGGCCGATCAACCGAG
TCCAAAGGGTGGGAGCGCAGGCAATCGTCGGGACCTTTCTCACTGTTGCA
ACCAGCGTCGCGGAGGCAGAGGCTCACATTGCCACGGCGCAACACCGTTT
TTGGAGGCGGGCCGTGAAAATGTGGACCGACCTCCACACGCTCCCGGATA
CCAATCCGCTCCGCCGAACTACAGCTCGGATCAGGAAATTCAGACGGTTT
CATCGTTCGCCGCTGTACCAGGTGGCAGACGCGCTGAAAAGCATTGATAT
GGAAACACTGGAGACTATTAACCCGTTTACATTAGCACCATGGGAGACAC
GTATGCAGACCGATGGCGAAGCCATGCCGGACCCACAGACCATACCGGGT
GGGTCAATACAGATCGCGACCAGCAGCTCGGCACGGAACGGGATGGTAGG
ATTTGGGGTGGCGATCGAGAAGCAGCCACCTCGATATCGGAAACTAAAAT
TGAAGACCTTTTACATGACACTGGGCGCAAGATCAGAACAGAATCCGTTC
TCCGCAGAGCTAGCGGCCATAGCTCATACATTGAACGGGCTGGTGGGACT
GAAAGGTTTCAGGCTCAGGTTGCTCACCAGCAACAAAGCTGCAGCCCTCA
CGTTACAGAACCCGCGACAACAGTCAGGCCAGGAATTCGTCTGCCATACG
TACAAGCTGATGAACAGACTACGGAGGAAAGGAAACCATATCAGGATACT
TTGGGTCCCTATTAGCGAAGACAACAAACTGCTGGGCCTAGCTAAGGAGC
AGGCCCGAGCCGCAACCCACGAGGACGCTATCCCACAAGCACAGGTTCCC
AGAATGAAGTCAACAACGCTGAATCTCGCACGATCCCAAGCAGTCACCAC
GAAAGCCTTGCCAGAGGACGTAGGAAGACACGTCAAACGAGTGGATGCCG
CACTCCCAGGAAAGCACACCCGACAGCTGTATGATGGATTATCGTGGAAA
GAAGCGACCGTGCTGGCTCAACTTCGGACCGGCATGGCAAGATTAAATGG
GTATCTCTACCGAATAAATGTCGCGCAGACAGACCAGTGTGCATGCGGAC
AAGCAAAAGAAACCGTGGAGCATTTCCTCTTCCGGTGTCGGAAGTGGACT
ACGCAACGGATCGCACTGCTACAATGTACTCGAACTCAGCGGGGCAATCT
CTCCCTCTGCCTGGGCGGGAAATCGCCATCCGATGATCAGCAATGGACGC
CGAACTTGGAGGCAGTACGGTCCTCGATACGATTTGCCATCGCCACGGGC
CGACTCGACGCCACCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013088-T1.utr5p1 | KJC3_013088-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013088-T1.utr3p1 | KJC3_013088-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR043502 |
| DBxref | InterPro:IPR036397 |
| DBxref | InterPro:IPR000477 |
| DBxref | InterPro:IPR036691 |
| DBxref | InterPro:IPR005135 |
| DBxref | PFAM:PF00078 |
| DBxref | PFAM:PF14529 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4227727..4233745 + |
|
