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KYF_000411-T1, KYF_000411-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_000411-T1
Unique NameKYF_000411-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:780612..781104+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_000411-T1 ID=KYF_000411-T1|Name=KYF_000411-T1|organism=Aspergillus niger KYF3|type=mRNA|length=493bp|location=Sequence derived from alignment at ch1:780612..781104+ (Aspergillus niger KYF3)
ATGCTCTTCTTCAGGTAAGAAAGCGCGCGAGATCCTCAAACAAGCACCAA
AGCGACCACAGCTAACTCCCTCTCCCTACGGGGATGACTATTTGGTAGCT
TCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACTCAAGAACGAC
ATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACCTGAACATTAA
GCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCGCATTTGTCGT
CCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTATGTTATGCTG
CCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGACGAGGAGAGG
TATGTTTCCTCATCCCTGTCCCCTTGATCTATTTGAAGGAACATGCTTAG
ATGTTTCTGTATGTGTGTGTTTGGTTGTATGGGTTGCTAATGATTCGTTT
GGTATATATAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Coding sequence (CDS) from alignment at ch1:780612..781104+

>KYF_000411-T1 ID=KYF_000411-T1|Name=KYF_000411-T1|organism=Aspergillus niger KYF3|type=CDS|length=891bp|location=Sequence derived from alignment at ch1:780612..781104+ (Aspergillus niger KYF3)
ATGCTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCAT
CGAACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACC
AGTACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAA
TACCCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGT
GCGGTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGG
ATGCGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATG
CTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGA
ACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGT
ACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATAC
CCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCG
GTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATG
CGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATGCTC
TTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACT
CAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACC
TGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCG
CATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTA
TGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGA
CGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM2KYF_000411Aspergillus niger KYF3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_000411-T1.exon1KYF_000411-T1.exon1Aspergillus niger KYF3exon
KYF_000411-T1.exon2KYF_000411-T1.exon2Aspergillus niger KYF3exon
KYF_000411-T1.exon3KYF_000411-T1.exon3Aspergillus niger KYF3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_000411-T1.cdsKYF_000411-T1.cdsAspergillus niger KYF3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_000411-T1KYF_000411-T1-proteinAspergillus niger KYF3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016654
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU6 snRNA-associated Sm-like protein LSm2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:780612..781104 +
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