You are here

Home

KYF_001071-T1, KYF_001071-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_001071-T1
Unique NameKYF_001071-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2782477..2783497+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_001071-T1 ID=KYF_001071-T1|Name=KYF_001071-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1021bp|location=Sequence derived from alignment at ch1:2782477..2783497+ (Aspergillus niger KYF3)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGCCGCCTTTGCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGTATGTTGTCCTGGAGTCCTTGGTGC
GATGTCCCGGCTTGGTGGCGCTGACTTTTTGCTGTATAGGCCGTATCCCC
ACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCACACCTATGT
CGTCAAGGATCTGGTCCCCGATTTGACCTACTTCTACAAGCAGTACAAGT
CGATCAAGCCTTACCTGCAGCGCGACACTCCGACCGCGGATGTAAGTGTT
GACAGCGTGTGCTAGCGATGTGGATTTTTTTACTGATAAATATATAGGGT
CTCGAGAACCGTCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCTGTA
CGAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACTGGT
GGAACAGCGAGGAGTACCTTGGACCCGCCATCCTCCTCCAGTCCTACCGT
TGGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGCTCT
CGACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCTCGC
GGACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATCAAG
AAGATGATGACTGCTCATTAG
back to top

Coding sequence (CDS) from alignment at ch1:2782477..2783497+

>KYF_001071-T1 ID=KYF_001071-T1|Name=KYF_001071-T1|organism=Aspergillus niger KYF3|type=CDS|length=2700bp|location=Sequence derived from alignment at ch1:2782477..2783497+ (Aspergillus niger KYF3)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGCCGCCTTTGCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGATCTGGT
CCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACTCCGACCGCGGATGGTCTCGAGAACCGTCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCCATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGCCGCCTTTGCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGATCTGGT
CCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACTCCGACCGCGGATGGTCTCGAGAACCGTCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCCATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGCCGCCTTTGCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGATCTGGT
CCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACTCCGACCGCGGATGGTCTCGAGAACCGTCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCCATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2KYF_001071Aspergillus niger KYF3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001071-T1.exon1KYF_001071-T1.exon1Aspergillus niger KYF3exon
KYF_001071-T1.exon2KYF_001071-T1.exon2Aspergillus niger KYF3exon
KYF_001071-T1.exon3KYF_001071-T1.exon3Aspergillus niger KYF3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001071-T1.cdsKYF_001071-T1.cdsAspergillus niger KYF3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_001071-T1KYF_001071-T1-proteinAspergillus niger KYF3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263X1F
DBxrefInterPro:IPR036010
DBxrefInterPro:IPR017896
DBxrefInterPro:IPR001041
DBxrefInterPro:IPR006058
DBxrefInterPro:IPR017900
DBxrefInterPro:IPR012675
DBxrefInterPro:IPR009051
DBxrefInterPro:IPR004489
DBxrefInterPro:IPR025192
DBxrefPFAM:PF13183
DBxrefPFAM:PF13534
DBxrefPFAM:PF13237
DBxrefPFAM:PF13085
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2782477..2783497 +
Powered by Drupal