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KYF_001253-T1, KYF_001253-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_001253-T1
Unique NameKYF_001253-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3323783..3324954-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_001253-T1 ID=KYF_001253-T1|Name=KYF_001253-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1172bp|location=Sequence derived from alignment at ch1:3323783..3324954- (Aspergillus niger KYF3)
ATGCCCGGAAAAGAGTTACCTGATCGCTGCATGAATTGTCATGAGGCTGA
ACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGCCAGTACGTCTCGCCCC
AAAGTACACCTGTTGCCGCTACTAGTCCATACTGATCTCAGTTACCCCTC
CATCCAGAGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGC
ATGGAACGGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAA
ATTGCTGCTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACA
TGCTGCACCGGCAGTTGGAGGCACTACGCTCAAAAAAACATGGTCCCGCG
GGCTTCGAAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGT
TCCTCCGCACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCT
GTTCCTTCACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGAT
GTCCATCAAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACAC
TTCGCTGTCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAA
CAGCCACATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTC
GTTGCTTTCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTC
GGATAGCAAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCG
GCTCTGCAGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTA
GAATTCAACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTA
TGCCACCCTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTC
CCTCAGAGAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATC
CGTTATGTCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGT
AACTAGGACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGAC
TGCAGTGCAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACG
GGCGAACAAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTC
CCAACCCGAATTGAGCTGTTAA
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Coding sequence (CDS) from alignment at ch1:3323783..3324954-

>KYF_001253-T1 ID=KYF_001253-T1|Name=KYF_001253-T1|organism=Aspergillus niger KYF3|type=CDS|length=2202bp|location=Sequence derived from alignment at ch1:3323783..3324954- (Aspergillus niger KYF3)
AGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAAC
GGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAAATTGCTG
CTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGCA
CCGGCAGTTGGAGGCACTACGCTCAAAAAAACATGGTCCCGCGGGCTTCG
AAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCCG
CACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCTT
CACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCATC
AAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACTTCGCTG
TCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCAC
ATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCTT
TCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAGC
AAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTGC
AGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTCA
ACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCACC
CTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAGA
GAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTATG
TCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAGG
ACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGTG
CAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAAC
AAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACCC
GAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGAA
TTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGCC
AAGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAA
CGGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAAATTGCT
GCTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGC
ACCGGCAGTTGGAGGCACTACGCTCAAAAAAACATGGTCCCGCGGGCTTC
GAAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCC
GCACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCT
TCACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCAT
CAAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACTTCGCT
GTCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCA
CATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCT
TTCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAG
CAAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTG
CAGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTC
AACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCAC
CCTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAG
AGAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTAT
GTCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAG
GACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGT
GCAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAA
CAAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACC
CGAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGA
ATTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGC
CA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
GO:0034227tRNA thio-modification
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCS2KYF_001253Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_001253-T1KYF_001253-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001253-T1.cdsKYF_001253-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001253-T1.exon2KYF_001253-T1.exon2Aspergillus niger KYF3exon
KYF_001253-T1.exon1KYF_001253-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
DBxrefInterPro:IPR019407
DBxrefInterPro:IPR014729
Productcytoplasmic tRNA 2-thiolation protein 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3323783..3324954 -
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