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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1756640..1757951- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_001874-T1 ID=KYF_001874-T1|Name=KYF_001874-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1312bp|location=Sequence derived from alignment at ch2:1756640..1757951- (Aspergillus niger KYF3)
ATGAGCTTCCGTCAAGCCCTCAGACCCTTCCGTCGCACCATGTCCGGTGA
AAAGATCTACGAAGGCGTATTCGGTATACCTCACTCCTAGCATTATTGCT
TTAATGTACCTCCAAGCTAATATAACGGAATGATAAACAGCCGTCCACAA
ACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACT
TCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCCGACGAGCGCGCCCGT
CGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACGCAACGTCT
CGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCA
TTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTA
GGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGA
TACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATG
TGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGCGGGAAGATT
ATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCT
TTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGA
GGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGA
ACGCATGAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGGGAGGAGAAGGC
TGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGA
GGGAGGCAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCT
GCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATGCTGAGTCTGC
TCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTG
CGCCGGCCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTGAAGCCGAGGAA
TCCTCGGAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCTGCAGTGAAGAT
CACCATGACGGTGTCTTCTGGCTTCTATGTGCGCTCCTTGGCGCACGACC
TGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCT
CGTCAGGCTCAATTCGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGA
CCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCG
AGGACTGGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTCCGCGTTCCCCG
AAACAAAATTAG back to topCoding sequence (CDS) from alignment at ch2:1756640..1757951- >KYF_001874-T1 ID=KYF_001874-T1|Name=KYF_001874-T1|organism=Aspergillus niger KYF3|type=CDS|length=2490bp|location=Sequence derived from alignment at ch2:1756640..1757951- (Aspergillus niger KYF3)
CCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTC
CAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCCGACGA
GCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCA
CGCAACGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTC
GCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAA
CGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCG
CCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCC
TACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCG
CGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATG
GCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAG
ATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTA
CGAGCCTGGAACGCATGAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGGG
AGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCG
ATTGTGGAGAGGGAGGCAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAA
GTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATG
CTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCT
GCGCCTGTTGCGCCGGCCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTGA
AGCCGAGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCTG
CAGTGAAGATCACCATGACGGTGTCTTCTGGCTTCTATGTGCGCTCCTTG
GCGCACGACCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCT
GATCCGGTCTCGTCAGGCTCAATTCGAGCTTCACCCGGACAAGGTGCTCG
AGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAG
CGATTCCTCGAGGACTGGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTCC
GCGTTCCCCGAAACAAAATTAGATGAGCTTCCGTCAAGCCCTCAGACCCT
TCCGTCGCACCATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTC
CACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAAC
GCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCCGACGAGCGCG
CCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACGCAA
CGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGAC
CGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGT
TCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAG
ACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGA
GCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGCGGGA
AGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAG
AAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCA
GAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGC
CTGGAACGCATGAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGGGAGGAG
AAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGT
GGAGAGGGAGGCAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCC
CGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATGCTGAG
TCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCC
TGTTGCGCCGGCCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTGAAGCCG
AGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCTGCAGTG
AAGATCACCATGACGGTGTCTTCTGGCTTCTATGTGCGCTCCTTGGCGCA
CGACCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCC
GGTCTCGTCAGGCTCAATTCGAGCTTCACCCGGACAAGGTGCTCGAGTAT
AAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATT
CCTCGAGGACTGGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTCCGCGTT
CCCCGAAACAAAATTAGATGAGCTTCCGTCAAGCCCTCAGACCCTTCCGT
CGCACCATGTCCGGTGAAAAGATCTACGAAGGCGTATTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264HU0 |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR014780 |
| DBxref | InterPro:IPR002501 |
| DBxref | PFAM:PF01509 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1756640..1757951 - |
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