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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1621581..1623647- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_003506-T1 ID=KYF_003506-T1|Name=KYF_003506-T1|organism=Aspergillus niger KYF3|type=mRNA|length=2067bp|location=Sequence derived from alignment at ch3:1621581..1623647- (Aspergillus niger KYF3)
ATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGT
TTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTC
CCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGCCCCCGATCC
GGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCTAACCCAGAA
AGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGC
GAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATG
CGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAG
AAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCAT
GCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAAATATCGGAG
CTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCATCGAAGGAGA
GCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAA
CCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGT
GTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGA
CGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTAT
GGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGAC
TCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCA
CCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGG
GTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGG
GAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGA
GGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACC
AGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAG
GAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAA
AGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAG
CCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCC
CAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAA
TAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAA
AACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAAC
GGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCA
CCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCT
GTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATT
CCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTC
GTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACA
AGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGT
ATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCACTCCCCTGT
TTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATAATATCTTTC
GTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGG
AATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCG
GTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGC
AGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGG
GAGAAGAGGGAGGTTAG back to topCoding sequence (CDS) from alignment at ch3:1621581..1623647- >KYF_003506-T1 ID=KYF_003506-T1|Name=KYF_003506-T1|organism=Aspergillus niger KYF3|type=CDS|length=7452bp|location=Sequence derived from alignment at ch3:1621581..1623647- (Aspergillus niger KYF3)
TTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCC
TCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCT
GCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGT
GGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAG
AGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGC
GGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGA
AGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCT
GCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCAT
TCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCC
TCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATT
TACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCAC
TTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGG
AGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACC
GACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCG
CAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGC
AAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACC
GAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGC
CGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAG
CCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTG
GCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTT
CAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACA
TCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAG
TGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCG
CAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCC
AGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCT
CCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCG
GAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCG
ATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGT
GAGGAAGAAGAAACTCATGCCTAACCCAGAAAGTCGGAATATGGTAGATA
AGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAG
AACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGA
GGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGC
TGGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACA
TTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGC
ACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACG
CTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCC
GCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGAC
GATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCG
CAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACT
AGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGG
CGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCG
AATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAG
GAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAAC
GCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAA
GGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAG
ATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGC
GTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTG
CGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGC
CTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAG
GAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTA
CTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGC
CCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAG
GACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATC
AGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTG
AAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTC
AAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCC
GGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAA
CGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCC
TCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCAT
CAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGA
TGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGC
GGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGC
CATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCG
ACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTC
GACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGA
TCGTATCTTCCGTGAGGAAGAAGAAACTCATGCCTAACCCAGAAAGTCGG
AATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACG
TCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGC
AATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAG
GTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATT
ATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGT
TTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTC
CCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCT
CGATCACTACTCGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCC
CTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAG
TCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGA
GGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAA
AAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCAT
CTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCG
CGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAG
CTGATTGTCGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAG
CTCGCAGATTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCA
GTTATCAGCTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCAC
TGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGA
GTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAG
AGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATC
CTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCA
CCTGAACGATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAG
ACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAG
CCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGAT
CTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGG
CCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGAC
AAGTACGTCGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACA
TGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAAC
AACCCATCATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGC
CAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCAT
GGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCG
CCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAA
CGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGA
CCCCATCGACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGC
GTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCCTAA
CCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGC
AGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCT
GTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCG
CCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACA
AGGGCATGCAATTATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCC
CCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCG
CGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCC
ATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCG
AGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGTTTCTCTGCTT
TCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCCTCTACGTCACG
TCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCAC
GGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTG
CGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAG
GAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGG
CGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCG
CTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACAT
TGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCATTCAGAAGATCA
ACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCCTCGTCACGAAC
AAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATTTACGAATACCT
CATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCA
AGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAG
GCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTA
CGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCG
AGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGCAAGACGACATG
TTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATC
CTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGC
GCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTC
CAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCA
GGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTTCAACTACACAA
TCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTC
AAGATGGCCGAACAACCCATCATCATCAACGGCACCGAGTGGCTCAGCCT
CAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCG
CCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTC
GAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGG
TCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATG
AGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCGATACCATTAAT
GAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGA
AACTCATGCCTAACCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGG
CACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGA
GGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGA
GTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCG
GGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACATTTTCCTGCGA
CGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCG
TACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAAGG
CCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAG
GCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGG
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031119 | tRNA pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR041708 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR020097 |
| DBxref | PFAM:PF01416 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1621581..1623647 - |
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