You are here

Home

KYF_004084-T1, KYF_004084-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_004084-T1
Unique NameKYF_004084-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3474137..3475156+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_004084-T1 ID=KYF_004084-T1|Name=KYF_004084-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1020bp|location=Sequence derived from alignment at ch3:3474137..3475156+ (Aspergillus niger KYF3)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACGTAAGATAACATAGTATATATCCTAAATCGGTGAGCATCC
GAGCTCACCAGACCAACAGAACTCATCAAATTGGGGAAACGGATGTCTAC
TCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACA
CCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCC
TTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGT
CGTCGGAGAGGCTAGAGGTCTCTGGCCAGGTACGGAACACTCGCGTTAAT
GCACTTCGTGCGCTTCCCGCTGACGTGGCTACAGAGTTTATTGCCCCAGA
TGTTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACT
CTCAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCC
GAGCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAA
CGACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCG
CTGTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGC
TTTCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGAT
GAACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCC
GCATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAG
GCAGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGA
GCAATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGA
GCAAGAACCTGGACAAATGA
back to top

Coding sequence (CDS) from alignment at ch3:3474137..3475156+

>KYF_004084-T1 ID=KYF_004084-T1|Name=KYF_004084-T1|organism=Aspergillus niger KYF3|type=CDS|length=2718bp|location=Sequence derived from alignment at ch3:3474137..3475156+ (Aspergillus niger KYF3)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCGACAACA
AGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCAAGAACG
AGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTCTATCTG
GCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGTCGGAGA
GGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAAAACTAG
GAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTG
CACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTAC
GTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCA
CCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATT
ATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGC
AGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAG
CATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTT
ATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTG
TACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAA
AGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGAC
AAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCT
CTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGG
ACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAAC
ATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCG
ACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCA
AGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTC
TATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGT
CGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAA
AACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTT
ATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTC
ACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACT
ATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATG
GCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGG
GTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCC
TTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAA
CGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCAT
AGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACA
GCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAAC
CTGGACAAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTC
TACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCT
ACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACT
GCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTT
TGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATG
TTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCT
CAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGA
GCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACG
ACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCT
GTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTT
TCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGA
ACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGC
ATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGC
AGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGC
AATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGC
AAGAACCTGGACAAATGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSN8KYF_004084Aspergillus niger KYF3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_004084-T1.exon1KYF_004084-T1.exon1Aspergillus niger KYF3exon
KYF_004084-T1.exon2KYF_004084-T1.exon2Aspergillus niger KYF3exon
KYF_004084-T1.exon3KYF_004084-T1.exon3Aspergillus niger KYF3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_004084-T1.cdsKYF_004084-T1.cdsAspergillus niger KYF3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_004084-T1KYF_004084-T1-proteinAspergillus niger KYF3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262K8C
DBxrefInterPro:IPR036915
DBxrefInterPro:IPR006671
DBxrefInterPro:IPR013763
DBxrefPFAM:PF00134
ProductRNA polymerase II holoenzyme cyclin-like subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3474137..3475156 +
Powered by Drupal