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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3880300..3882345- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_005495-T1 ID=KYF_005495-T1|Name=KYF_005495-T1|organism=Aspergillus niger KYF3|type=mRNA|length=2046bp|location=Sequence derived from alignment at ch4:3880300..3882345- (Aspergillus niger KYF3)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAA
GAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTC
CATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGC
ACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCC
TTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAG
CGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCT
CTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCA
TGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAG
AACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGC
CAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACC
CCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAA
CGCACACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGCATCCT
GTAACTGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCC
AACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCG
CTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTAC
CTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCC
GCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCT
TCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCC
CGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCC
TTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAG
GCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGAC
TACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCA
CACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCAC
GTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCC
TTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATT
CCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCC
TGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACG
CTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCG
CGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCG
CGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGG
AGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAA
GCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGC
GACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAG
AACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAA
GGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA back to topCoding sequence (CDS) from alignment at ch4:3880300..3882345- >KYF_005495-T1 ID=KYF_005495-T1|Name=KYF_005495-T1|organism=Aspergillus niger KYF3|type=CDS|length=5787bp|location=Sequence derived from alignment at ch4:3880300..3882345- (Aspergillus niger KYF3)
CTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATTCCCTGCCA
TCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGACCATCATG
TTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATCCTTCCTTC
AATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAAACACCAAG
CAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCCACACCCCC
GCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGACATCCCCTC
AGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAAGACTTTCA
TCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTCTGAGTGTG
GTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTCCTCGAAGT
CCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCATAACCGACG
CAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCCTTGCAGAC
CGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAG
CTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGACCTCGATT
GGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCAAGATGCCC
GAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAACTTGGACTG
GGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCGGAAGGAAC
AAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAGCTGCTGGC
AAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTCGACAACCG
GAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGG
ACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGCTCGAGACG
GAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAACGACTGCT
TAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGGGGATGATG
ATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAGATTTACAA
CGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCA
AACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCG
ACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGC
TGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTA
CGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCC
CAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGA
TCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGC
AACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAG
ATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAA
GGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATGGCCCCCAA
ACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGACGCCCGCCC
TGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCACCCGCATG
ACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCATAAAGATGT
CGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTTCTTGATTC
CAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGAAACACCAT
GTCGGAGCCATCATCATCTCTCCAACCAGCTTGCAAATGACGTACCTCAC
AGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCAC
TCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGT
GTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCA
ACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACT
TCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGAC
GTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGAT
TGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCG
GACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGA
GAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACC
GTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCG
AAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGC
CAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAG
CAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCAT
GGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGT
GACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGA
CAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGA
ACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGC
GTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCG
GGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGG
AGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATC
CGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAA
GGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTG
ACTGAAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGC
CTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATG
ATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAG
CTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTT
GAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGT
TGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTT
GTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACT
ACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCA
GTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGC
AACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGA
TAAACGCACACCCGCTAGATGGCCCCCAAACCACCCCCGGGCACCTCCGC
CAGAGCATGGGACGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATG
CCGTTGCTTCTATGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCG
ATTCCCTTGTTCATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGG
AAGTGGAAAGACCTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGC
GCCTGGAAGAACCACTCAAGAAACACCATGTCGGAGCCATCATCATCTCT
CCAACCAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATT
CCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGA
CCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATC
CTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAA
ACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCC
ACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGAC
ATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAA
GACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTC
TGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTC
CTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCAT
AACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCC
TTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGG
TTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGA
CCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCA
AGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAAC
TTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCG
GAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAG
CTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTC
GACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCA
GCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGC
TCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAA
CGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGG
GGATGATGATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAG
ATTTACAACGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTC
CACTCTCAAACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCC
CCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACC
ACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTT
GGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCC
ACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGG
CTTCTGGATCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCT
ACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTG
TTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTC
AAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATG
GCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGAC
GCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCA
CCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCAT
AAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTT
CTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGA
AACACCATGTCGGAGCCATCATCATCTCTCCAACCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR025313 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF13959 |
| DBxref | PFAM:PF00270 |
| Product | ATP-dependent rRNA helicase spb4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3880300..3882345 - |
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