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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4378173..4380047+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_005656-T1 ID=KYF_005656-T1|Name=KYF_005656-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1875bp|location=Sequence derived from alignment at ch4:4378173..4380047+ (Aspergillus niger KYF3)
ATGCAGGAAAAATCGAGCACTGTCGCCGCTTACGCGGCCGGAGCATCTCT
TGCGGCTATTGCTTTATTCTACGTCTTCGGCCCCAACTACACTATCGATG
GAGACGAGTCACAGGACAGTTCCCGCAAGAAAAACATTGTTGGCTTGTCC
AACCCCGCCAATGACTGCTTCATCAACTCGGTGCTGCAGGCTCTTGCAGG
GCTCGGTGATCTGCGTGTCTACCTGATCAGAGAGCTCCACAAGCGTGAAC
TAGACGGTTCTGATATATATAATGAACTTCCTCCACCGGCTGATATGCCT
CGGGATGCGAAGCCGGACAGGATAAGGGAATTGCAACAGGGGAGTATTAC
CAGAGCTCTCAAGGAGATGCTCGACCGACTGAACGAACGCCCGATCTACA
AGAAAACCATCTCCGCGCGACCCTTCATCCAGTCTCTTGAGTACGCCTAT
CGGACGCGGATCAGCCGTAGCCAGCAAGATGCGCAGGAGTTCTTGCAGAT
TGTCGCAGAAAGACTTTGCGATGAGTACCATGCCGGCGTGAAAGCACGAC
TACGAGCGAAGGCCATACCAGAGTTGTCGTCAGGCCCGGAGGCGGTAAAA
TCAGGCGATGAATCTTCTCCCAAAGTCCCTGCGGAAGTTGAGGTGCGGAT
TGATGACGGATCTGAGAACGGCTTACCCGCTATTATCGACAATAAACTCA
AAGAAATCGACCATGAGTACGGCTTCCCTTTCGAAGGAAAGCTCGAGTCC
CAGATCGAGTGCCTGTTTTGCCACTATCAATACAAGCCTAATCAGACCTC
CTTTGTAAATCTGACCTTGCAAGTGCCTCAAAAGAGCTCTACGACGCTTA
GCGCCTGCTTTGACGGTTTACTCAAAACTGAATACATTGAAGACTTCAAA
TGCGACAAATGTCGATTGCAGCATGCTCTTGAGTTCAAGACGCAGGAATT
GCACCGGACCCGCTCCAAAGATGACCGAGCTAGGTTTGAGTCAGAAATTG
AGCGAATCCAGACGGCCCTCGCTACAAATCCAGAAGGTCCTTTAGAGGGT
GTAATCTTGCCACCTTCTGACCTCGCCCCTAAACGAAAGATTGCGAGACA
TATGCGGATAACGGCCTTTCCCAAAATCATTGCCATTCATCTTTCGCGAT
CGATCTTTGACCACAGCAGCTCTTCCAAGAATGCAGCCAAAGTATCTTTT
CCGGAGCGGCTGCCGCTCGGTGGTATCCTGAGTCGAGAATGGTACAGGCT
GCTGGCAATTGTCTGTCATAAAGGCAGCCACCATAGCGGACATTACGAGT
CATTTCGACGTAATCACCTTTATCCACCCTTCTCAACGCCAGATGTATTC
AGCTCGTACGCTCAGAGTCGGGCAACTAGCGAAAACCCATCCGAAGCGCC
GAGCCCTCAGCTAAAGGCTCGCAACTCGTTCGAGAGCGAACCGGCGCCCC
TCAGCATCTCGACATCGATAGGGTCACCGACCAGTCCCTCTCAGCTGCAA
CCGCCCCCGTCACCGACTCCTCGACCGACATCGAGCCCACGGGTTTCTTT
CCAGAGCACTCGCTCGAAGTCGTCAGCATCTAAGCAGAACCTATCGCCCG
TGTCAGACCCGCACAGCTCATCCTCCACAGAGGGTGGGCGCTGGAGCAAG
TCATTTTCGCGCGCGTCGTTCACCAGCGATCGCAGTACGCCAGCAACTTC
GGTTGAAGCTTCAGGCTCCAGCAGTCGGCTCCGTCGACGCCGTAAGCAGA
ACGATCGATGGTGGCGTGTCTCGGACGAGAAAGTCAAAGAATGCAAGACT
TCCGATGTTTTGGGGATGCAGCGAGAGGTCTACCTCTTGTTCTATGAGAT
TGAGAAGCCCACGCTTGGCGCGTAA back to topCoding sequence (CDS) from alignment at ch4:4378173..4380047+ >KYF_005656-T1 ID=KYF_005656-T1|Name=KYF_005656-T1|organism=Aspergillus niger KYF3|type=CDS|length=1875bp|location=Sequence derived from alignment at ch4:4378173..4380047+ (Aspergillus niger KYF3)
ATGCAGGAAAAATCGAGCACTGTCGCCGCTTACGCGGCCGGAGCATCTCT
TGCGGCTATTGCTTTATTCTACGTCTTCGGCCCCAACTACACTATCGATG
GAGACGAGTCACAGGACAGTTCCCGCAAGAAAAACATTGTTGGCTTGTCC
AACCCCGCCAATGACTGCTTCATCAACTCGGTGCTGCAGGCTCTTGCAGG
GCTCGGTGATCTGCGTGTCTACCTGATCAGAGAGCTCCACAAGCGTGAAC
TAGACGGTTCTGATATATATAATGAACTTCCTCCACCGGCTGATATGCCT
CGGGATGCGAAGCCGGACAGGATAAGGGAATTGCAACAGGGGAGTATTAC
CAGAGCTCTCAAGGAGATGCTCGACCGACTGAACGAACGCCCGATCTACA
AGAAAACCATCTCCGCGCGACCCTTCATCCAGTCTCTTGAGTACGCCTAT
CGGACGCGGATCAGCCGTAGCCAGCAAGATGCGCAGGAGTTCTTGCAGAT
TGTCGCAGAAAGACTTTGCGATGAGTACCATGCCGGCGTGAAAGCACGAC
TACGAGCGAAGGCCATACCAGAGTTGTCGTCAGGCCCGGAGGCGGTAAAA
TCAGGCGATGAATCTTCTCCCAAAGTCCCTGCGGAAGTTGAGGTGCGGAT
TGATGACGGATCTGAGAACGGCTTACCCGCTATTATCGACAATAAACTCA
AAGAAATCGACCATGAGTACGGCTTCCCTTTCGAAGGAAAGCTCGAGTCC
CAGATCGAGTGCCTGTTTTGCCACTATCAATACAAGCCTAATCAGACCTC
CTTTGTAAATCTGACCTTGCAAGTGCCTCAAAAGAGCTCTACGACGCTTA
GCGCCTGCTTTGACGGTTTACTCAAAACTGAATACATTGAAGACTTCAAA
TGCGACAAATGTCGATTGCAGCATGCTCTTGAGTTCAAGACGCAGGAATT
GCACCGGACCCGCTCCAAAGATGACCGAGCTAGGTTTGAGTCAGAAATTG
AGCGAATCCAGACGGCCCTCGCTACAAATCCAGAAGGTCCTTTAGAGGGT
GTAATCTTGCCACCTTCTGACCTCGCCCCTAAACGAAAGATTGCGAGACA
TATGCGGATAACGGCCTTTCCCAAAATCATTGCCATTCATCTTTCGCGAT
CGATCTTTGACCACAGCAGCTCTTCCAAGAATGCAGCCAAAGTATCTTTT
CCGGAGCGGCTGCCGCTCGGTGGTATCCTGAGTCGAGAATGGTACAGGCT
GCTGGCAATTGTCTGTCATAAAGGCAGCCACCATAGCGGACATTACGAGT
CATTTCGACGTAATCACCTTTATCCACCCTTCTCAACGCCAGATGTATTC
AGCTCGTACGCTCAGAGTCGGGCAACTAGCGAAAACCCATCCGAAGCGCC
GAGCCCTCAGCTAAAGGCTCGCAACTCGTTCGAGAGCGAACCGGCGCCCC
TCAGCATCTCGACATCGATAGGGTCACCGACCAGTCCCTCTCAGCTGCAA
CCGCCCCCGTCACCGACTCCTCGACCGACATCGAGCCCACGGGTTTCTTT
CCAGAGCACTCGCTCGAAGTCGTCAGCATCTAAGCAGAACCTATCGCCCG
TGTCAGACCCGCACAGCTCATCCTCCACAGAGGGTGGGCGCTGGAGCAAG
TCATTTTCGCGCGCGTCGTTCACCAGCGATCGCAGTACGCCAGCAACTTC
GGTTGAAGCTTCAGGCTCCAGCAGTCGGCTCCGTCGACGCCGTAAGCAGA
ACGATCGATGGTGGCGTGTCTCGGACGAGAAAGTCAAAGAATGCAAGACT
TCCGATGTTTTGGGGATGCAGCGAGAGGTCTACCTCTTGTTCTATGAGAT
TGAGAAGCCCACGCTTGGCGCGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | MEROPS:MER0005855 |
| DBxref | InterPro:IPR038765 |
| DBxref | InterPro:IPR028889 |
| DBxref | InterPro:IPR018200 |
| DBxref | InterPro:IPR001394 |
| DBxref | PFAM:PF13423 |
| DBxref | PFAM:PF00443 |
| Product | ubiquitin-specific protease |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4378173..4380047 + |
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