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KYF_005916-T1, KYF_005916-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_005916-T1
Unique NameKYF_005916-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5206408..5206916+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_005916-T1 ID=KYF_005916-T1|Name=KYF_005916-T1|organism=Aspergillus niger KYF3|type=mRNA|length=509bp|location=Sequence derived from alignment at ch4:5206408..5206916+ (Aspergillus niger KYF3)
ATGGTAATTACCTCTGAAGCCTACCATGATCCAATATATCTACTGCGTCT
ACTGACTCTCACATGAACAGTTACCTCTCGGTCTCCTGACGGCCGCGCAA
GGCCACCCCATGCTCGTGGAACTCAAGAACGGCGAAACCCTCAACGGACA
CCTCGCCAATTGCGACAACTGGATGAACCTGATACTCAAGGAAGTTGTTC
AGACGAGTCCCGAAGGTGACCGCTTCTTCCGGCTACCAGAGGTCTACGTC
AGAGGAAACAATGTGAGTATCTTGCCTGCGCCCACCCTAGATCCAATTTC
AGGGAATCTCCCCGGCCCTCCCTACTAACCGCTTATAGATCAAATACCTA
CGGATCCCCGAAGAAATCATAGAGATGGTCAAGGAGCAACAGGCGAACCA
GTCGCAAAATCGCAACCGCGGGCCGCGTGAGGGTGGTAGGGGTGACCGAG
GTCGTGGTGGAGGCCGGGGTCGTGGACGCGGCCGCGGCCGTGGTGGCAGG
GACGCTTGA
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Coding sequence (CDS) from alignment at ch4:5206408..5206916+

>KYF_005916-T1 ID=KYF_005916-T1|Name=KYF_005916-T1|organism=Aspergillus niger KYF3|type=CDS|length=1098bp|location=Sequence derived from alignment at ch4:5206408..5206916+ (Aspergillus niger KYF3)
ATGTTACCTCTCGGTCTCCTGACGGCCGCGCAAGGCCACCCCATGCTCGT
GGAACTCAAGAACGGCGAAACCCTCAACGGACACCTCGCCAATTGCGACA
ACTGGATGAACCTGATACTCAAGGAAGTTGTTCAGACGAGTCCCGAAGGT
GACCGCTTCTTCCGGCTACCAGAGGTCTACGTCAGAGGAAACAATATCAA
ATACCTACGGATCCCCGAAGAAATCATAGAGATGGTCAAGGAGCAACAGG
CGAACCAGTCGCAAAATCGCAACCGCGGGCCGCGTGAGGGTGGTAGGGGT
GACCGAGGTCGTGGTGGAGGCCGGGGTCGTGGACGCGGCCGCGGCCGTGG
TGGCAGGGACGCTTGAATGTTACCTCTCGGTCTCCTGACGGCCGCGCAAG
GCCACCCCATGCTCGTGGAACTCAAGAACGGCGAAACCCTCAACGGACAC
CTCGCCAATTGCGACAACTGGATGAACCTGATACTCAAGGAAGTTGTTCA
GACGAGTCCCGAAGGTGACCGCTTCTTCCGGCTACCAGAGGTCTACGTCA
GAGGAAACAATATCAAATACCTACGGATCCCCGAAGAAATCATAGAGATG
GTCAAGGAGCAACAGGCGAACCAGTCGCAAAATCGCAACCGCGGGCCGCG
TGAGGGTGGTAGGGGTGACCGAGGTCGTGGTGGAGGCCGGGGTCGTGGAC
GCGGCCGCGGCCGTGGTGGCAGGGACGCTTGAATGTTACCTCTCGGTCTC
CTGACGGCCGCGCAAGGCCACCCCATGCTCGTGGAACTCAAGAACGGCGA
AACCCTCAACGGACACCTCGCCAATTGCGACAACTGGATGAACCTGATAC
TCAAGGAAGTTGTTCAGACGAGTCCCGAAGGTGACCGCTTCTTCCGGCTA
CCAGAGGTCTACGTCAGAGGAAACAATATCAAATACCTACGGATCCCCGA
AGAAATCATAGAGATGGTCAAGGAGCAACAGGCGAACCAGTCGCAAAATC
GCAACCGCGGGCCGCGTGAGGGTGGTAGGGGTGACCGAGGTCGTGGTGGA
GGCCGGGGTCGTGGACGCGGCCGCGGCCGTGGTGGCAGGGACGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000956nuclear-transcribed mRNA catabolic process
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM4KYF_005916Aspergillus niger KYF3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_005916-T1.exon1KYF_005916-T1.exon1Aspergillus niger KYF3exon
KYF_005916-T1.exon2KYF_005916-T1.exon2Aspergillus niger KYF3exon
KYF_005916-T1.exon3KYF_005916-T1.exon3Aspergillus niger KYF3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_005916-T1.cdsKYF_005916-T1.cdsAspergillus niger KYF3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_005916-T1KYF_005916-T1-proteinAspergillus niger KYF3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034101
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductRNA processing protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5206408..5206916 +
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