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ATCC64974_100750-T1, ATCC64974_100750-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_100750-T1
Unique NameATCC64974_100750-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:1566654..1569088+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_100750-T1 ID=ATCC64974_100750-T1|Name=ATCC64974_100750-T1|organism=Aspergillus niger N402|type=mRNA|length=2435bp|location=Sequence derived from alignment at OGUI01000017.1:1566654..1569088+ (Aspergillus niger N402)
ATGCCCAGATTAGATGGTAAGTATAATTCCTCCTCTCTGCTGATTGCCCG
TTGCTGATGCATCCAGACTCGGAAACGATCCGCATTCTTGTCTCTACAGA
CAACCATGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGCT
GGAAAAGCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGAC
ATGGTGCTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAA
GTCCATGTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATA
AGCCTTGCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGT
GCTTTCAATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCCC
CATCTTTTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACATC
TGGCTGCATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGA
CGGACCCCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAA
AGGACGCACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGC
GTCTATTTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCA
ATCCAGAAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTA
TGCACACACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCC
TGGACCTCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACGA
TTGAACCCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGC
GACATCCCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCA
GTATCACAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTC
CGCCCATTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCA
AAAGCTTGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCA
TGGAGATTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAA
ATGCAAGATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACT
AGTGCGACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACT
GTGAGAACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAAT
GTGAACGATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTAC
GCGCAAACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTCT
CCACCCTCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCC
GCACAGTCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGC
CCAATTCATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAACG
AATCACTCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCAC
GATCTAGAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCAT
GGAGAGATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGA
AACGCACCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGAC
ACCGAATTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTC
CGACAACGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCG
CCGAACCACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGGC
CGAGGCCGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAAC
CGCCACCACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACAA
CCTCTACTAAAAGCCGTAAACGCCGCACCGTCTCCGACGAAGAAGATGAA
CAAGAGGATGTCATAATGCTCGACGATGACGATGATGACGACGACGACAA
CGCAGCCACCTCCCTCCCCAACATAGACGAAGAGGACGATGATGACGATG
ACTCCCTCTTCGTCAAACAACCCGCCAAATCTACTACCAGTACTAGATCT
CGCAGAACAACAACAGCAGCAACAGCGAAAGCAACAACACAACGCCGCAA
AGCTCCATCTCCAGCACCTTCATCCAATACAGTTGGAGGAACCGGACAAG
CTACGCGAAGAACTCGGGGCAAGCAAGCAACCCAGACAACGCTGAATTTT
GTAGGCTCGCAAAGTAGTGTGCGAGGGACGGCGGGGTCTGGGAGATCAAT
GAGGGCTACGAGGGCGGCGAGTGAGGATATTGAGGATGATAGTGATGCGT
TTGAGCCGATGGCTAGTAGTGCGAGGCGCAGATGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:1566654..1569088+

>ATCC64974_100750-T1 ID=ATCC64974_100750-T1|Name=ATCC64974_100750-T1|organism=Aspergillus niger N402|type=CDS|length=4770bp|location=Sequence derived from alignment at OGUI01000017.1:1566654..1569088+ (Aspergillus niger N402)
ATGCCCAGATTAGATGACTCGGAAACGATCCGCATTCTTGTCTCTACAGA
CAACCATGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGCT
GGAAAAGCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGAC
ATGGTGCTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAA
GTCCATGTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATA
AGCCTTGCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGT
GCTTTCAATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCCC
CATCTTTTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACATC
TGGCTGCATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGA
CGGACCCCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAA
AGGACGCACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGC
GTCTATTTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCA
ATCCAGAAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTA
TGCACACACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCC
TGGACCTCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACGA
TTGAACCCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGC
GACATCCCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCA
GTATCACAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTC
CGCCCATTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCA
AAAGCTTGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCA
TGGAGATTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAA
ATGCAAGATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACT
AGTGCGACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACT
GTGAGAACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAAT
GTGAACGATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTAC
GCGCAAACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTCT
CCACCCTCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCC
GCACAGTCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGC
CCAATTCATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAACG
AATCACTCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCAC
GATCTAGAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCAT
GGAGAGATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGA
AACGCACCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGAC
ACCGAATTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTC
CGACAACGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCG
CCGAACCACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGGC
CGAGGCCGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAAC
CGCCACCACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACAA
CCTCTACTAAAAGCCGTAAACGCCGCACCGTCTCCGACGAAGAAGATGAA
CAAGAGGATGTCATAATGCTCGACGATGACGATGATGACGACGACGACAA
CGCAGCCACCTCCCTCCCCAACATAGACGAAGAGGACGATGATGACGATG
ACTCCCTCTTCGTCAAACAACCCGCCAAATCTACTACCAGTACTAGATCT
CGCAGAACAACAACAGCAGCAACAGCGAAAGCAACAACACAACGCCGCAA
AGCTCCATCTCCAGCACCTTCATCCAATACAGTTGGAGGAACCGGACAAG
CTACGCGAAGAACTCGGGGCAAGCAAGCAACCCAGACAACGCTGAATTTT
GTAGGCTCGCAAAGTAGTGTGCGAGGGACGGCGGGGTCTGGGAGATCAAT
GAGGGCTACGAGGGCGGCGAGTGAGGATATTGAGGATGATAGTGATGCGT
TTGAGCCGATGGCTAGTAGTGCGAGGCGCAGATGAATGCCCAGATTAGAT
GACTCGGAAACGATCCGCATTCTTGTCTCTACAGACAACCATGTCGGATA
CAATGAACGGGATCCCATCCGTGGTGATGACAGCTGGAAAAGCTTTCATG
AGGTAATGTGTCTGGCCAAGGAACAAGATGTGGACATGGTGCTTCTGGCA
GGCGATCTCTTCCACGAGAACAAGCCATCGCGCAAGTCCATGTACCAAGT
TATGCGCTCCATTCGTATGAACTGTCTCGGCGATAAGCCTTGCGAACTGG
AGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGTGCTTTCAATCACGTG
AACTACGAGGATTTGGATATCAATGTGGCTATCCCCATCTTTTCAATTCA
CGGCAATCACGATGATCCGTCCGGAGAAGGACATCTGGCTGCATTGGACC
TACTTCAGGTGTCGGGGTTGATCAATTACTATGGACGGACCCCCGAGTCG
GACAATATCCAGATTAAACCGGTTTTGCTCCAGAAAGGACGCACGAAACT
TGCTCTCTACGGTATGAGCAACGTCCGCGATGAGCGTCTATTTCGCACAT
TTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCAATCCAGAAAGAAGAC
TGGTTCAACTTGATGTCTGTTCATCAGAACCATTATGCACACACTGAGAC
AGGCTATTTGCCCGAGAATTTCCTACCCGAATTCCTGGACCTCGTCGTCT
GGGGCCACGAACACGAGTGTTTAATCAACCCACGATTGAACCCCGAGACC
AAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGCGACATCCCTGGTTCC
TGGCGAATCAGTGGCCAAACATGTAGCCATCCTCAGTATCACAGGCCGGG
AGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTCCGCCCATTCGCCATG
CGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCAAAAGCTTGCCCGCAA
GGACAACAACCGCACGGAAGTGACTCGCCTTCTCATGGAGATTGTCGAGG
AACTGATCGAAGAAGCGAAAACGGAATGGCTAGAAATGCAAGATGAGACA
GCAGAAGACGAAGAGCTAGAAGTCCCACTACCACTAGTGCGACTGCGCGT
TGAAACCTCAACGCCAGAAGGAGGCAGTTATGACTGTGAGAACCCGCAGC
GATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAATGTGAACGATGTCGTC
CAGTTCTACCGCAAGAAGAAAAACACCAACAGTACGCGCAAACCGGGTGA
AACCGACCTCGACGAGACGGCAGTCTCACACCTCTCCACCCTCGACACCG
TCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCCGCACAGTCTCTGACC
ATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGCCCAATTCATCGACAA
AGACGACAAACATGCCTTGGAAATGTTCGTCAACGAATCACTCGAGAGCC
AAATGAAGCACTTACTGGCCCTAGATCGCGACCACGATCTAGAGGAAGAA
GAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCATGGAGAGATATCGCAC
TCAAATGGAAGACATGTTCTCCCGCGGTATCAAGAAACGCACCCGCGGCA
AGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGACACCGAATTCGACGGT
GTCTGGGAGGACCAACCCGGCGCTCTCATCCACTCCGACAACGAGGACGG
CGATCCCAATGAAGACGTAGCCGGCGAGGATGGCGCCGAACCACCCACCA
CATCACGAGCAACATCATCCACACGCGGCCGCGGCCGAGGCCGTGGCGGT
AGAGCCACCACCACTGCCGCTACAACCCGCAAAACCGCCACCACAAAAGC
AGCACCTGCTACTACTACTTCAAAGAAAACCACAACCTCTACTAAAAGCC
GTAAACGCCGCACCGTCTCCGACGAAGAAGATGAACAAGAGGATGTCATA
ATGCTCGACGATGACGATGATGACGACGACGACAACGCAGCCACCTCCCT
CCCCAACATAGACGAAGAGGACGATGATGACGATGACTCCCTCTTCGTCA
AACAACCCGCCAAATCTACTACCAGTACTAGATCTCGCAGAACAACAACA
GCAGCAACAGCGAAAGCAACAACACAACGCCGCAAAGCTCCATCTCCAGC
ACCTTCATCCAATACAGTTGGAGGAACCGGACAAGCTACGCGAAGAACTC
GGGGCAAGCAAGCAACCCAGACAACGCTGAATTTTGTAGGCTCGCAAAGT
AGTGTGCGAGGGACGGCGGGGTCTGGGAGATCAATGAGGGCTACGAGGGC
GGCGAGTGAGGATATTGAGGATGATAGTGATGCGTTTGAGCCGATGGCTA
GTAGTGCGAGGCGCAGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030870Mre11 complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:00084083'-5' exonuclease activity
GO:0030145manganese ion binding
GO:0004519endonuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MUS23ATCC64974_100750Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_100750-T1.exon1ATCC64974_100750-T1.exon1Aspergillus niger N402exon
ATCC64974_100750-T1.exon2ATCC64974_100750-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_100750-T1.cdsATCC64974_100750-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_100750-T1ATCC64974_100750-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262GVX
DBxrefInterPro:IPR041796
DBxrefInterPro:IPR029052
DBxrefInterPro:IPR004843
DBxrefInterPro:IPR038487
DBxrefInterPro:IPR003701
DBxrefInterPro:IPR007281
DBxrefPFAM:PF04152
DBxrefPFAM:PF00149
ProductDouble-strand break repair protein mus-23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:1566654..1569088 +
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