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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000017.1:1633170..1635173- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_100960-T1 ID=ATCC64974_100960-T1|Name=ATCC64974_100960-T1|organism=Aspergillus niger N402|type=mRNA|length=2004bp|location=Sequence derived from alignment at OGUI01000017.1:1633170..1635173- (Aspergillus niger N402)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGTCGAGTTCTCCGACGACGAAGCCGAAGCAGAGTATAAGCGCAAGCTT
AAACAGAAGCGCCAGGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGC
AAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAAT
TGAACTACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGG
CCTAAGAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCGTTGAAGC
CGACGGCCACTCCGGCCCCAGCAGAAACAACTCCGGCTTCCGCGGTGGTG
GACGCGGTCGTGGCCGAGGATATGATCGTGGAGGTCGCGGTGGTGGTGGC
CGCGGTGGCCGCCCCTCCCACGATTCGGCTCCTCATCATCAAGATCGTCA
ACAGTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAACCTC
AAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGGTGCA
TACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACA
ACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAATTTCC
AGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCAGCTT
CCTGCTAACGTGCACATCAACCCCTTGTTCTTGGCTGCCCTTCAGCAACA
ACAGCAGCAGCAGCAACAACAACAACAAGTACCAGGACAACCCCAACAAC
CCCAGCAACCGACGATGAACTTCGACCAAGTAAAAGCACAGTTGGATCTT
CTACGGCAATTAAGTAACAACCAGAACCAGAACCAGGGGCCTCCTCGGTC
GTGA back to topCoding sequence (CDS) from alignment at OGUI01000017.1:1633170..1635173- >ATCC64974_100960-T1 ID=ATCC64974_100960-T1|Name=ATCC64974_100960-T1|organism=Aspergillus niger N402|type=CDS|length=2004bp|location=Sequence derived from alignment at OGUI01000017.1:1633170..1635173- (Aspergillus niger N402)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGTCGAGTTCTCCGACGACGAAGCCGAAGCAGAGTATAAGCGCAAGCTT
AAACAGAAGCGCCAGGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGC
AAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAAT
TGAACTACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGG
CCTAAGAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCGTTGAAGC
CGACGGCCACTCCGGCCCCAGCAGAAACAACTCCGGCTTCCGCGGTGGTG
GACGCGGTCGTGGCCGAGGATATGATCGTGGAGGTCGCGGTGGTGGTGGC
CGCGGTGGCCGCCCCTCCCACGATTCGGCTCCTCATCATCAAGATCGTCA
ACAGTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAACCTC
AAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGGTGCA
TACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACA
ACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAATTTCC
AGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCAGCTT
CCTGCTAACGTGCACATCAACCCCTTGTTCTTGGCTGCCCTTCAGCAACA
ACAGCAGCAGCAGCAACAACAACAACAAGTACCAGGACAACCCCAACAAC
CCCAGCAACCGACGATGAACTTCGACCAAGTAAAAGCACAGTTGGATCTT
CTACGGCAATTAAGTAACAACCAGAACCAGAACCAGGGGCCTCCTCGGTC
GTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_100960-T1.exon1 | ATCC64974_100960-T1.exon1 | Aspergillus niger N402 | exon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_100960-T1 | ATCC64974_100960-T1-protein | Aspergillus niger N402 | polypeptide |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263G4R |
| DBxref | InterPro:IPR009000 |
| DBxref | InterPro:IPR038664 |
| DBxref | InterPro:IPR007504 |
| DBxref | PFAM:PF04410 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000017.1 | supercontig | OGUI01000017.1:1633170..1635173 - |
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