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ATCC64974_10210-T1, ATCC64974_10210-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_10210-T1
Unique NameATCC64974_10210-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000002.1:857428..857920-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_10210-T1 ID=ATCC64974_10210-T1|Name=ATCC64974_10210-T1|organism=Aspergillus niger N402|type=mRNA|length=493bp|location=Sequence derived from alignment at OGUI01000002.1:857428..857920- (Aspergillus niger N402)
ATGCTCTTCTTCAGGTAAGAAAGCGCGCGAGATCCTCAAACAAGCACCAA
AGCGACCACAGCTAACTCCCTCTCCCTACGGGGATGACTATTTGGTAGCT
TCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACTCAAGAACGAC
ATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACCTGAACATTAA
GCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCGCATTTGTCGT
CCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTATGTTATGCTG
CCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGACGAGGAGAGG
TATGTTTCCTCATCCCTGTCCCCTTGATCTATTTGAAGGAACATGCTTAG
ATGTTTCTGTATGTGTGTGTATGGTTGTATGGGTTGCTAATGATTCGTTT
GGTATATATAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Coding sequence (CDS) from alignment at OGUI01000002.1:857428..857920-

>ATCC64974_10210-T1 ID=ATCC64974_10210-T1|Name=ATCC64974_10210-T1|organism=Aspergillus niger N402|type=CDS|length=891bp|location=Sequence derived from alignment at OGUI01000002.1:857428..857920- (Aspergillus niger N402)
AAGCTGCGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAAC
CAACCAAACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCA
CCCTCAAATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGAC
GTCTTGGATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTT
TATTCGTGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGG
ATATTGGGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAGAAG
CTGCGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAACCAA
CCAAACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCACCC
TCAAATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGACGTC
TTGGATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTTTAT
TCGTGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGGATA
TTGGGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAGAAGCTG
CGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAACCAACCA
AACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCACCCTCA
AATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGACGTCTTG
GATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTTTATTCG
TGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGGATATTG
GGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM2ATCC64974_10210Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_10210-T1ATCC64974_10210-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_10210-T1.cdsATCC64974_10210-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_10210-T1.exon3ATCC64974_10210-T1.exon3Aspergillus niger N402exon
ATCC64974_10210-T1.exon2ATCC64974_10210-T1.exon2Aspergillus niger N402exon
ATCC64974_10210-T1.exon1ATCC64974_10210-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016654
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU6 snRNA-associated Sm-like protein LSm2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000002.1supercontigOGUI01000002.1:857428..857920 -
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