You are here

Home

ATCC64974_103860-T1, ATCC64974_103860-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_103860-T1
Unique NameATCC64974_103860-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:2560552..2561368+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_103860-T1 ID=ATCC64974_103860-T1|Name=ATCC64974_103860-T1|organism=Aspergillus niger N402|type=mRNA|length=817bp|location=Sequence derived from alignment at OGUI01000017.1:2560552..2561368+ (Aspergillus niger N402)
ATGTCGACCCAAGGCGAACCATTCTACCTCCGCTACTAGTAAGGATGATT
TGTGTGTGGCCCAGATTTCCTCAGCTGCTGACAGTTCCGCAGCTCAGGTC
ACTCTGGGCGGTTCGGACATGAGTTTCTAGGTAGGTTCCCCGCGATGGTC
TACAGCTCGAGCTTCCCTATTAACAGAGCTTAAGAGTTCGACTTCCGTAC
CCTTGGCGATGGCCGTAGCGCTGCCGTGCGATATGCGAACAACTCCAACT
ACCGCAATGATTCCCTGATCCGGAAAGAAAGTGAGTGCTAGGAAAGGGCC
GTCCGGTTCTACATCGATTCGCTAATGGGCGATCACTACAGTGTGCGTGA
GCGCGTCGATGATTCAGGAAGTGAAGCGCATCATCAAGGAAAGTGAGATC
ATGAAGTGAGTCAATCAGTGGGGTTCAATGGCGGTTGGTGGGGGTAAAAA
GATGCTGATGCGACGCAGGGAGGATGATTCCAAATGGCCTCAGAAGAACA
AGGATGGACGTCAGGAACTTGAGATTCGGCTCGGGAACGAGCATATCTCC
TTTGAGGTATGTCCATCGCCTCATTGACATAGATACTAACAGACGGGAAC
CTGACATCTGTTGTAGACTGCGAAAATCGGCTCATTGGTGGATGTGACTG
AATCTGCGGACCCGGAAGGCCTACGAGTCTTCTACTATCTCGTCCAGGAC
CTGAAGGCCCTCATCTTCTCGCTTATTTCGCTCCATTTCAAGGTAAACAC
AGCTCCTTTGTCTCTTGCTACTCTATGAGTATCGAGTCTAATTCGGTAAT
AGATTAAACCCATCTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000017.1:2560552..2561368+

>ATCC64974_103860-T1 ID=ATCC64974_103860-T1|Name=ATCC64974_103860-T1|organism=Aspergillus niger N402|type=CDS|length=3255bp|location=Sequence derived from alignment at OGUI01000017.1:2560552..2561368+ (Aspergillus niger N402)
ATGTCGACCCAAGGCGAACCATTCTACCTCCGCTACTACTCAGGTCACTC
TGGGCGGTTCGGACATGAGTTTCTAGAGTTCGACTTCCGTACCCTTGGCG
ATGGCCGTAGCGCTGCCGTGCGATATGCGAACAACTCCAACTACCGCAAT
GATTCCCTGATCCGGAAAGAAATGTGCGTGAGCGCGTCGATGATTCAGGA
AGTGAAGCGCATCATCAAGGAAAGTGAGATCATGAAGGAGGATGATTCCA
AATGGCCTCAGAAGAACAAGGATGGACGTCAGGAACTTGAGATTCGGCTC
GGGAACGAGCATATCTCCTTTGAGACTGCGAAAATCGGCTCATTGGTGGA
TGTGACTGAATCTGCGGACCCGGAAGGCCTACGAGTCTTCTACTATCTCG
TCCAGGACCTGAAGGCCCTCATCTTCTCGCTTATTTCGCTCCATTTCAAG
ATTAAACCCATCTAAATGTCGACCCAAGGCGAACCATTCTACCTCCGCTA
CTACTCAGGTCACTCTGGGCGGTTCGGACATGAGTTTCTAGAGTTCGACT
TCCGTACCCTTGGCGATGGCCGTAGCGCTGCCGTGCGATATGCGAACAAC
TCCAACTACCGCAATGATTCCCTGATCCGGAAAGAAATGTGCGTGAGCGC
GTCGATGATTCAGGAAGTGAAGCGCATCATCAAGGAAAGTGAGATCATGA
AGGAGGATGATTCCAAATGGCCTCAGAAGAACAAGGATGGACGTCAGGAA
CTTGAGATTCGGCTCGGGAACGAGCATATCTCCTTTGAGACTGCGAAAAT
CGGCTCATTGGTGGATGTGACTGAATCTGCGGACCCGGAAGGCCTACGAG
TCTTCTACTATCTCGTCCAGGACCTGAAGGCCCTCATCTTCTCGCTTATT
TCGCTCCATTTCAAGATTAAACCCATCTAAATGTCGACCCAAGGCGAACC
ATTCTACCTCCGCTACTACTCAGGTCACTCTGGGCGGTTCGGACATGAGT
TTCTAGAGTTCGACTTCCGTACCCTTGGCGATGGCCGTAGCGCTGCCGTG
CGATATGCGAACAACTCCAACTACCGCAATGATTCCCTGATCCGGAAAGA
AATGTGCGTGAGCGCGTCGATGATTCAGGAAGTGAAGCGCATCATCAAGG
AAAGTGAGATCATGAAGGAGGATGATTCCAAATGGCCTCAGAAGAACAAG
GATGGACGTCAGGAACTTGAGATTCGGCTCGGGAACGAGCATATCTCCTT
TGAGACTGCGAAAATCGGCTCATTGGTGGATGTGACTGAATCTGCGGACC
CGGAAGGCCTACGAGTCTTCTACTATCTCGTCCAGGACCTGAAGGCCCTC
ATCTTCTCGCTTATTTCGCTCCATTTCAAGATTAAACCCATCTAAATGTC
GACCCAAGGCGAACCATTCTACCTCCGCTACTACTCAGGTCACTCTGGGC
GGTTCGGACATGAGTTTCTAGAGTTCGACTTCCGTACCCTTGGCGATGGC
CGTAGCGCTGCCGTGCGATATGCGAACAACTCCAACTACCGCAATGATTC
CCTGATCCGGAAAGAAATGTGCGTGAGCGCGTCGATGATTCAGGAAGTGA
AGCGCATCATCAAGGAAAGTGAGATCATGAAGGAGGATGATTCCAAATGG
CCTCAGAAGAACAAGGATGGACGTCAGGAACTTGAGATTCGGCTCGGGAA
CGAGCATATCTCCTTTGAGACTGCGAAAATCGGCTCATTGGTGGATGTGA
CTGAATCTGCGGACCCGGAAGGCCTACGAGTCTTCTACTATCTCGTCCAG
GACCTGAAGGCCCTCATCTTCTCGCTTATTTCGCTCCATTTCAAGATTAA
ACCCATCTAAATGTCGACCCAAGGCGAACCATTCTACCTCCGCTACTACT
CAGGTCACTCTGGGCGGTTCGGACATGAGTTTCTAGAGTTCGACTTCCGT
ACCCTTGGCGATGGCCGTAGCGCTGCCGTGCGATATGCGAACAACTCCAA
CTACCGCAATGATTCCCTGATCCGGAAAGAAATGTGCGTGAGCGCGTCGA
TGATTCAGGAAGTGAAGCGCATCATCAAGGAAAGTGAGATCATGAAGGAG
GATGATTCCAAATGGCCTCAGAAGAACAAGGATGGACGTCAGGAACTTGA
GATTCGGCTCGGGAACGAGCATATCTCCTTTGAGACTGCGAAAATCGGCT
CATTGGTGGATGTGACTGAATCTGCGGACCCGGAAGGCCTACGAGTCTTC
TACTATCTCGTCCAGGACCTGAAGGCCCTCATCTTCTCGCTTATTTCGCT
CCATTTCAAGATTAAACCCATCTAAATGTCGACCCAAGGCGAACCATTCT
ACCTCCGCTACTACTCAGGTCACTCTGGGCGGTTCGGACATGAGTTTCTA
GAGTTCGACTTCCGTACCCTTGGCGATGGCCGTAGCGCTGCCGTGCGATA
TGCGAACAACTCCAACTACCGCAATGATTCCCTGATCCGGAAAGAAATGT
GCGTGAGCGCGTCGATGATTCAGGAAGTGAAGCGCATCATCAAGGAAAGT
GAGATCATGAAGGAGGATGATTCCAAATGGCCTCAGAAGAACAAGGATGG
ACGTCAGGAACTTGAGATTCGGCTCGGGAACGAGCATATCTCCTTTGAGA
CTGCGAAAATCGGCTCATTGGTGGATGTGACTGAATCTGCGGACCCGGAA
GGCCTACGAGTCTTCTACTATCTCGTCCAGGACCTGAAGGCCCTCATCTT
CTCGCTTATTTCGCTCCATTTCAAGATTAAACCCATCTAAATGTCGACCC
AAGGCGAACCATTCTACCTCCGCTACTACTCAGGTCACTCTGGGCGGTTC
GGACATGAGTTTCTAGAGTTCGACTTCCGTACCCTTGGCGATGGCCGTAG
CGCTGCCGTGCGATATGCGAACAACTCCAACTACCGCAATGATTCCCTGA
TCCGGAAAGAAATGTGCGTGAGCGCGTCGATGATTCAGGAAGTGAAGCGC
ATCATCAAGGAAAGTGAGATCATGAAGGAGGATGATTCCAAATGGCCTCA
GAAGAACAAGGATGGACGTCAGGAACTTGAGATTCGGCTCGGGAACGAGC
ATATCTCCTTTGAGACTGCGAAAATCGGCTCATTGGTGGATGTGACTGAA
TCTGCGGACCCGGAAGGCCTACGAGTCTTCTACTATCTCGTCCAGGACCT
GAAGGCCCTCATCTTCTCGCTTATTTCGCTCCATTTCAAGATTAAACCCA
TCTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0035145exon-exon junction complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_103860ATCC64974_103860Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103860-T1ATCC64974_103860-T1-proteinAspergillus niger N402polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103860-T1.exon1ATCC64974_103860-T1.exon1Aspergillus niger N402exon
ATCC64974_103860-T1.exon2ATCC64974_103860-T1.exon2Aspergillus niger N402exon
ATCC64974_103860-T1.exon3ATCC64974_103860-T1.exon3Aspergillus niger N402exon
ATCC64974_103860-T1.exon4ATCC64974_103860-T1.exon4Aspergillus niger N402exon
ATCC64974_103860-T1.exon5ATCC64974_103860-T1.exon5Aspergillus niger N402exon
ATCC64974_103860-T1.exon6ATCC64974_103860-T1.exon6Aspergillus niger N402exon
ATCC64974_103860-T1.exon7ATCC64974_103860-T1.exon7Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103860-T1.cdsATCC64974_103860-T1.cdsAspergillus niger N402CDS


Properties
Property NameValue
DBxrefInterPro:IPR017441
DBxrefInterPro:IPR004023
DBxrefInterPro:IPR036605
DBxrefPFAM:PF02792
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:2560552..2561368 +
Powered by Drupal