You are here

Home

ATCC64974_103970-T1, ATCC64974_103970-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_103970-T1
Unique NameATCC64974_103970-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:2605586..2607090+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_103970-T1 ID=ATCC64974_103970-T1|Name=ATCC64974_103970-T1|organism=Aspergillus niger N402|type=mRNA|length=1505bp|location=Sequence derived from alignment at OGUI01000017.1:2605586..2607090+ (Aspergillus niger N402)
ATGTCTGCTGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAG
CTCGCTCGCCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCC
CGCGGCAGCTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCC
ATTCCTGCTGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGG
AGGTGTCCGATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGA
CTCAGCTGTATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTT
GCGGGGTTCTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAG
CCACAAGTGGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGT
GCGTATACCTCTCTTCGTGAAGTGCCCAGAGTCTCGTTAATTGACCATCT
ACAGGGTTCAACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATG
AAGGTCACCCCCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCT
CTCTTGTCTCCTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCA
TCACTCGTCGTACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGT
CGCACCGAGGACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCA
AGCCCACGGGCCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCC
TAGTCGCTCTCCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTC
ACCCCCGACGGTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTG
CCGAGAGCTGCACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCC
TTCTCGTCTCCCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCC
ATCCCCACTGCCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTT
CCTCTCCAACCCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACT
CCCTCCGTCTCGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACC
TCTCAAACTCCTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCG
TCGTGACCCTGCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCC
AGGTTGCCTCCCCCAAGACCCTCTCCCAGCGCCGTGTCGGATTCACCGTT
GAGAAGGGCTCCCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGA
TGAGTCCCGCACCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTA
CCCTGGGCGGCACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCAT
AAGAAGGGCACCGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGC
TACGGTTACGGGTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGG
CTTAG
back to top

Coding sequence (CDS) from alignment at OGUI01000017.1:2605586..2607090+

>ATCC64974_103970-T1 ID=ATCC64974_103970-T1|Name=ATCC64974_103970-T1|organism=Aspergillus niger N402|type=CDS|length=2898bp|location=Sequence derived from alignment at OGUI01000017.1:2605586..2607090+ (Aspergillus niger N402)
ATGTCTGCTGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAG
CTCGCTCGCCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCC
CGCGGCAGCTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCC
ATTCCTGCTGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGG
AGGTGTCCGATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGA
CTCAGCTGTATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTT
GCGGGGTTCTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAG
CCACAAGTGGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGG
TTCAACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATGAAGGTC
ACCCCCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCTCTCTTG
TCTCCTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCATCACTC
GTCGTACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGTCGCACC
GAGGACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCAAGCCCA
CGGGCCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCCTAGTCG
CTCTCCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTCACCCCC
GACGGTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTGCCGAGA
GCTGCACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCCTTCTCG
TCTCCCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCCATCCCC
ACTGCCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTTCCTCTC
CAACCCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACTCCCTCC
GTCTCGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACCTCTCAA
ACTCCTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCGTCGTGA
CCCTGCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCCAGGTTG
CCTCCCCCAAGACCCTCTCCCAGCGCCGTGTCGGATTCACCGTTGAGAAG
GGCTCCCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGATGAGTC
CCGCACCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTACCCTGG
GCGGCACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCATAAGAAG
GGCACCGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCTACGGT
TACGGGTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGCTTAGA
TGTCTGCTGTACGTCCCGTGAGAAAAGGTCTTCACCTTTTGGGCTCGAGC
TCGCTCGCCCGCCCCGCCTCTGTCGCTGTCAATGGCGCATCTCTGCTCCC
GCGGCAGCTGGCAGCTTCTCCGCGCGCTCTCCGCCCCGCGGCCAGCTCCA
TTCCTGCTGCTCGTCCACTTCCCCGGGTGACTTCGCTGTCTGCTCAAGGA
GGTGTCCGATATGCCTCGTCTGTAGCTCCTTCAGGTCCAGTGAAGAAGAC
TCAGCTGTATGACCTTCACTTGGCCCGGGGTGCCAAAATGGTCCCCTTTG
CGGGGTTCTCCATGCCCCTGCAGTATTCCGACCTCAGTCATGTTGAGAGC
CACAAGTGGACTCGGGAAAAGGCCAGTCTTTTCGACGTGAGCCATATGGT
TCAACATCAGCTCAGCGGTCCCGGCGCTCTCGACCTCCTCATGAAGGTCA
CCCCCTCATCCCTCGACAAGCTCAAGCATAACCAATCCACTCTCTCTTGT
CTCCTGGAGGATGGAACTGGCGGCATTATCGATGACACCGTCATCACTCG
TCGTACCGATGACACCTTCTACTTCGTGACCAACGCCGGTCGTCGCACCG
AGGACCTGGCCTTCCTGCAAGCCGAAATCGACACCTACAAGCAAGCCCAC
GGGCCCGACAGCCTGAAGTGGGAGATCCTCGAGGACCGCGCCCTAGTCGC
TCTCCAAGGTCCTAAGGCTGCCTCCGTCCTCCAATCCCTCGTCACCCCCG
ACGGTGCCAACTCAGATCTCTCCACCCTCTACTTCGGTAACTGCCGAGAG
CTGCACCTCACCTTCCCCGACGGCACCACCACCCCGCAGCCCCTTCTCGT
CTCCCGAACCGGCTACACCGGCGAAGATGGCTTTGAGATCTCCATCCCCA
CTGCCAGCGACGCCACCCTACCTGTCCGCGTTACCGAGCTCTTCCTCTCC
AACCCCGACGAAGTCCGTCTCGCCGGTCTCGCCGCGCGCGACTCCCTCCG
TCTCGAAGCCGGAATGTGTCTCTATGGAAGCGACATTTCCACCTCTCAAA
CTCCTCCCGGCGCCTCCCTGACCTGGCTCGTAGGCAAGGAGCGTCGTGAC
CCTGCCACCGCCAACTTCAACGGCGCCTCCACCATCCTCCCCCAGGTTGC
CTCCCCCAAGACCCTCTCCCAGCGCCGTGTCGGATTCACCGTTGAGAAGG
GCTCCCCTGCCCGTGAGGGCGCCATCATTGTCGATCTGAACGATGAGTCC
CGCACCCAGATCGGTGTCATTACCTCTGGCCTTCCTAGCCCTACCCTGGG
CGGCACTAACATTGCCATGGGCTACATCAAGAACGGCCTGCATAAGAAGG
GCACCGAGGTTGGCGTCTTGGTGAGGAACAAGCTCCGCAAGGCTACGGTT
ACGGGTATGCCTTGGGTTGAGAGCAAGTTCTATCGTCCCAAGGCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006546glycine catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004047aminomethyltransferase activity
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_103970ATCC64974_103970Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103970-T1.exon1ATCC64974_103970-T1.exon1Aspergillus niger N402exon
ATCC64974_103970-T1.exon2ATCC64974_103970-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103970-T1.cdsATCC64974_103970-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103970-T1ATCC64974_103970-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263J6Z
DBxrefInterPro:IPR029043
DBxrefInterPro:IPR006223
DBxrefInterPro:IPR013977
DBxrefInterPro:IPR027266
DBxrefInterPro:IPR006222
DBxrefInterPro:IPR028896
DBxrefPFAM:PF08669
DBxrefPFAM:PF01571
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:2605586..2607090 +
Powered by Drupal