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ATCC64974_104490-T1, ATCC64974_104490-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_104490-T1
Unique NameATCC64974_104490-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:2760612..2761884+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_104490-T1 ID=ATCC64974_104490-T1|Name=ATCC64974_104490-T1|organism=Aspergillus niger N402|type=mRNA|length=1273bp|location=Sequence derived from alignment at OGUI01000017.1:2760612..2761884+ (Aspergillus niger N402)
ATGACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGG
CCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGGTGAGCAATTCAAACG
GCAAAATAATATATGTGATGACGGGTAGGTGAAGTGCATGTACTGATGCT
CTTCGTAACAGGGTGTCTCGGGCCTGACAAGTAGGGATATTAAGCTGTTT
GTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACGTACGTCTA
TCCTTTGCCAGTCTGCTTCCGTGCCATCGCCCCTTTTTCAGTTCTGCTCA
CAAGCATGTTCTTGATTATGGTACAGGCCAAAACGTTTGTTGGAACAAAT
CAAGGGTATTTCGGAACAGAAAGCCACGAAAGTCCTGGTTGAGGGTGAGT
ATTGCTCTTGTGGCATTGGAACTCGTTCGCGAGGATCTTGTCTGACTCAA
TGAATTTGTAGCTATGAAGCTTGTACCGATGGGCTTTACCACCGCGACCG
AAATGCATGCGCGACGAAACGAACTTATCTCAATTACGACAGGCTCGAAA
CAGTTAGACACCCTTCTTGGAGGTGGCATTGAGACAGGCTCTATCACAGA
GATCTTTGGAGAATTCAGGACAGGAAAAAGTCAGATATGTCATACACTCG
CTGTGACTTGCCAATTGCCTTTTGATATGGGCGGAGGAGAAGGAAAATGC
CTATACATTGACACAGAAGGTACCTTCCGACCAGTGCGTCTGTTGGCGGT
TGCACAGCGATACGGGCTGGTGGGAGAGGAGGTGCTGGATAATGTGGCAT
ACGCTCGTGCGTACAACTCAGACCATCAACTTCAGCTACTCAACCAAGCT
TCTCAGATGATGTGTGAGACTCGGTTCTCGCTCCTTGTCGTTGATTCTGC
CACTTCTCTGTACCGGACGGACTTCAACGGCCGTGGTGAATTGTCGTCGA
GACAAACACATCTCGCGAAGTTCATGCGTACTCTGCAGCGCCTCGCTGAT
GAGTTTGGTATTGCGGTCGTCATTACGAACCAGGTCGTTGCCCAGGTGGA
TGGTGGCCCGAGTGCAATGTTCAATCCCGATCCAAAGAAGCCAATCGGTG
GTAACATTATTGCGCATGCAAGTACGACGCGGCTAAGTTTGAAGAAAGGA
CGGGGCGAGACTCGGGTCTGTAAGATCTACGATAGCCCATGTCTCCCTGA
GAGCGATTGTTTGTTCGCTATTAATGAGGATGGTATCGGGGACCCGAACC
CCAAGGACTTGGAGAATGACTGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:2760612..2761884+

>ATCC64974_104490-T1 ID=ATCC64974_104490-T1|Name=ATCC64974_104490-T1|organism=Aspergillus niger N402|type=CDS|length=4176bp|location=Sequence derived from alignment at OGUI01000017.1:2760612..2761884+ (Aspergillus niger N402)
ATGACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGG
CCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGGGTGTCTCGGGCCTGA
CAAGTAGGGATATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAG
TCGGTTGCATATACGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTC
GGAACAGAAAGCCACGAAAGTCCTGGTTGAGGCTATGAAGCTTGTACCGA
TGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAACTTATC
TCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCAT
TGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAA
GTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATG
GGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTACCTTCCG
ACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGG
AGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAA
CTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTC
GCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACG
GCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGT
ACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAA
CCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCG
ATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGTACGACG
CGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTA
CGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGG
ATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGAATGACT
GCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCCCCGG
AGCGCCCACGCCACTCTCTTCCCTGGAGGGTGTCTCGGGCCTGACAAGTA
GGGATATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTT
GCATATACGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACA
GAAAGCCACGAAAGTCCTGGTTGAGGCTATGAAGCTTGTACCGATGGGCT
TTACCACCGCGACCGAAATGCATGCGCGACGAAACGAACTTATCTCAATT
ACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCATTGAGAC
AGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAAGTCAGA
TATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATGGGCGGA
GGAGAAGGAAAATGCCTATACATTGACACAGAAGGTACCTTCCGACCAGT
GCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGGAGGTGC
TGGATAATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAACTTCAG
CTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTCGCTCCT
TGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACGGCCGTG
GTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGTACTCTG
CAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAACCAGGT
CGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCGATCCAA
AGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGTACGACGCGGCTA
AGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTACGATAG
CCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGGATGGTA
TCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGAATGACTGCCGAC
ACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCCCCGGAGCGCC
CACGCCACTCTCTTCCCTGGAGGGTGTCTCGGGCCTGACAAGTAGGGATA
TTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATAT
ACGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGC
CACGAAAGTCCTGGTTGAGGCTATGAAGCTTGTACCGATGGGCTTTACCA
CCGCGACCGAAATGCATGCGCGACGAAACGAACTTATCTCAATTACGACA
GGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCATTGAGACAGGCTC
TATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAAGTCAGATATGTC
ATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATGGGCGGAGGAGAA
GGAAAATGCCTATACATTGACACAGAAGGTACCTTCCGACCAGTGCGTCT
GTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGGAGGTGCTGGATA
ATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAACTTCAGCTACTC
AACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTCGCTCCTTGTCGT
TGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACGGCCGTGGTGAAT
TGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGTACTCTGCAGCGC
CTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAACCAGGTCGTTGC
CCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCGATCCAAAGAAGC
CAATCGGTGGTAACATTATTGCGCATGCAAGTACGACGCGGCTAAGTTTG
AAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTACGATAGCCCATG
TCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGGATGGTATCGGGG
ACCCGAACCCCAAGGACTTGGAGAATGACTGAATGACTGCCGACACCGAT
ACTCAGAATGAGTACGACGATGGGCTTCCGGGCCCCGGAGCGCCCACGCC
ACTCTCTTCCCTGGAGGGTGTCTCGGGCCTGACAAGTAGGGATATTAAGC
TGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACGCCA
AAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCACGAA
AGTCCTGGTTGAGGCTATGAAGCTTGTACCGATGGGCTTTACCACCGCGA
CCGAAATGCATGCGCGACGAAACGAACTTATCTCAATTACGACAGGCTCG
AAACAGTTAGACACCCTTCTTGGAGGTGGCATTGAGACAGGCTCTATCAC
AGAGATCTTTGGAGAATTCAGGACAGGAAAAAGTCAGATATGTCATACAC
TCGCTGTGACTTGCCAATTGCCTTTTGATATGGGCGGAGGAGAAGGAAAA
TGCCTATACATTGACACAGAAGGTACCTTCCGACCAGTGCGTCTGTTGGC
GGTTGCACAGCGATACGGGCTGGTGGGAGAGGAGGTGCTGGATAATGTGG
CATACGCTCGTGCGTACAACTCAGACCATCAACTTCAGCTACTCAACCAA
GCTTCTCAGATGATGTGTGAGACTCGGTTCTCGCTCCTTGTCGTTGATTC
TGCCACTTCTCTGTACCGGACGGACTTCAACGGCCGTGGTGAATTGTCGT
CGAGACAAACACATCTCGCGAAGTTCATGCGTACTCTGCAGCGCCTCGCT
GATGAGTTTGGTATTGCGGTCGTCATTACGAACCAGGTCGTTGCCCAGGT
GGATGGTGGCCCGAGTGCAATGTTCAATCCCGATCCAAAGAAGCCAATCG
GTGGTAACATTATTGCGCATGCAAGTACGACGCGGCTAAGTTTGAAGAAA
GGACGGGGCGAGACTCGGGTCTGTAAGATCTACGATAGCCCATGTCTCCC
TGAGAGCGATTGTTTGTTCGCTATTAATGAGGATGGTATCGGGGACCCGA
ACCCCAAGGACTTGGAGAATGACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003690double-stranded DNA binding
GO:0008094DNA-dependent ATPase activity
GO:0000150recombinase activity
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:1990426mitotic recombination-dependent replication fork processing
GO:0000724double-strand break repair via homologous recombination
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RHP51ATCC64974_104490Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_104490-T1.exon1ATCC64974_104490-T1.exon1Aspergillus niger N402exon
ATCC64974_104490-T1.exon2ATCC64974_104490-T1.exon2Aspergillus niger N402exon
ATCC64974_104490-T1.exon3ATCC64974_104490-T1.exon3Aspergillus niger N402exon
ATCC64974_104490-T1.exon4ATCC64974_104490-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_104490-T1.cdsATCC64974_104490-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_104490-T1ATCC64974_104490-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000171.10
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR010995
DBxrefInterPro:IPR033925
DBxrefInterPro:IPR020587
DBxrefInterPro:IPR020588
DBxrefInterPro:IPR016467
DBxrefInterPro:IPR011941
DBxrefInterPro:IPR013632
DBxrefInterPro:IPR003593
DBxrefPFAM:PF00154
DBxrefPFAM:PF08423
DBxrefPFAM:PF14520
DBxrefPFAM:PF13481
ProductRecA recombinase Rhp51
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:2760612..2761884 +
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