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ATCC64974_106390-T1, ATCC64974_106390-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_106390-T1
Unique NameATCC64974_106390-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:3402607..3403063-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_106390-T1 ID=ATCC64974_106390-T1|Name=ATCC64974_106390-T1|organism=Aspergillus niger N402|type=mRNA|length=457bp|location=Sequence derived from alignment at OGUI01000017.1:3402607..3403063- (Aspergillus niger N402)
ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG
TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT
ATAAAGGTGAACGATCATATTCTGCTTTGTTCTACCTACCATTTCTGCCA
GTATCGTATCTTTTTCCCCTGGTACAGGAGAAGGGAACCACTCTTATGGG
GGACAGGAGATAGATACAATCGAAGAACAGGAATATTAAAATGCTAACGA
ACTCTTCAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG
GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA
TGCCTTCATTCGTGGAAATAATGGTTTGTTATGTCACACCTAAGGAGATG
AACACGTCTAACTATCTCTCTTCGACTCGCATAGTGCTGTATATATCCGC
GCATTGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:3402607..3403063-

>ATCC64974_106390-T1 ID=ATCC64974_106390-T1|Name=ATCC64974_106390-T1|organism=Aspergillus niger N402|type=CDS|length=729bp|location=Sequence derived from alignment at OGUI01000017.1:3402607..3403063- (Aspergillus niger N402)
TGCTGTATATATCCGCGCATTGAGGGAACTTCAATCGGTAGATGGCTATA
TGAATATCGCTCTGGAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCC
CGCAGTTACGGGGATGCCTTCATTCGTGGAAATAATGATGGAGAACGGTG
CCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGC
GCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGTGCTGTA
TATATCCGCGCATTGAGGGAACTTCAATCGGTAGATGGCTATATGAATAT
CGCTCTGGAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTT
ACGGGGATGCCTTCATTCGTGGAAATAATGATGGAGAACGGTGCCTCATC
TGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCGCCCCAG
TTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGTGCTGTATATATCC
GCGCATTGAGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG
GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA
TGCCTTCATTCGTGGAAATAATGATGGAGAACGGTGCCTCATCTGATGGC
AAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCGCCCCAGTTACTGT
TAAATTGAACTCAGGCGTTGTCTATAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM6ATCC64974_106390Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_106390-T1ATCC64974_106390-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_106390-T1.cdsATCC64974_106390-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_106390-T1.exon3ATCC64974_106390-T1.exon3Aspergillus niger N402exon
ATCC64974_106390-T1.exon2ATCC64974_106390-T1.exon2Aspergillus niger N402exon
ATCC64974_106390-T1.exon1ATCC64974_106390-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016487
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU4/U6-U5 snRNP complex subunit lsm6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:3402607..3403063 -
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