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ATCC64974_107820-T1, ATCC64974_107820-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_107820-T1
Unique NameATCC64974_107820-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:3818658..3819450+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_107820-T1 ID=ATCC64974_107820-T1|Name=ATCC64974_107820-T1|organism=Aspergillus niger N402|type=mRNA|length=793bp|location=Sequence derived from alignment at OGUI01000017.1:3818658..3819450+ (Aspergillus niger N402)
ATGAAGTGTTAGTGAAATGCTGCATCACCTCGACTCTTGATTTTTCTCGT
CTTCGAATCCAAACTGACAGGATGTTACGATAGTCATGAAAGTGGGCCGT
GTGGCCATCATCACCCGTGGCCGTTACGCCGGTAAGAAGGTACGACAACC
GATTTCTTCATTTTCTGGCGAGGAGATACATATATATATACCCCGAGGTG
GAATGGATTGGAAGGAATGATTTTTTGCCGACTCGAAGGAAATGAATTTT
CGATTTGCATGGGAATAAAACAATCGAGCAGAAACGCGAATGATGGGCGA
ACTACCATGGGGGCAAAAGCGAACGGAATGTGCAAGGATATATGTGCTGA
CGAGGGTTTCTTTTCGCGAATGACAGGTCGTCATTGTCCAGCCTAACGAC
ACTGGCTCCAAGGCGCACCCCTTCCCTTACGCCATCGTCGCCGGTATCGA
GCGCTACCCCCTCAAGGTCACCCGCCGCATGGGTAAGAAGACCGTCGAGA
AGCGCAGCCGCATCAAGCCCTTCATCAAGGTCGTCAACTACAACCACTTG
ATGCCCACTCGCTACACCCTTGAGCTCGAGGGTCTTAAGGGTGCCGTCTC
CACCGAGACCTTCAAGGAGGTTTCCACCCGCGAGGACGCCAAGAAGAACG
TCAAGAAGGCCCTTGAGGACCGCTACACCAGCGGCAAGAACCGTTGGTTC
TTCACTCCTCTGCGTACGTTTTGCCATCCATTGCTTTTTGCCTACGTTGG
CTGGATTAAGGTTCGCAATGCTGACGGTTCTACAGGTTTCTAA
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Coding sequence (CDS) from alignment at OGUI01000017.1:3818658..3819450+

>ATCC64974_107820-T1 ID=ATCC64974_107820-T1|Name=ATCC64974_107820-T1|organism=Aspergillus niger N402|type=CDS|length=1632bp|location=Sequence derived from alignment at OGUI01000017.1:3818658..3819450+ (Aspergillus niger N402)
ATGAAGTTCATGAAAGTGGGCCGTGTGGCCATCATCACCCGTGGCCGTTA
CGCCGGTAAGAAGGTCGTCATTGTCCAGCCTAACGACACTGGCTCCAAGG
CGCACCCCTTCCCTTACGCCATCGTCGCCGGTATCGAGCGCTACCCCCTC
AAGGTCACCCGCCGCATGGGTAAGAAGACCGTCGAGAAGCGCAGCCGCAT
CAAGCCCTTCATCAAGGTCGTCAACTACAACCACTTGATGCCCACTCGCT
ACACCCTTGAGCTCGAGGGTCTTAAGGGTGCCGTCTCCACCGAGACCTTC
AAGGAGGTTTCCACCCGCGAGGACGCCAAGAAGAACGTCAAGAAGGCCCT
TGAGGACCGCTACACCAGCGGCAAGAACCGTTGGTTCTTCACTCCTCTGC
GTTTCTAAATGAAGTTCATGAAAGTGGGCCGTGTGGCCATCATCACCCGT
GGCCGTTACGCCGGTAAGAAGGTCGTCATTGTCCAGCCTAACGACACTGG
CTCCAAGGCGCACCCCTTCCCTTACGCCATCGTCGCCGGTATCGAGCGCT
ACCCCCTCAAGGTCACCCGCCGCATGGGTAAGAAGACCGTCGAGAAGCGC
AGCCGCATCAAGCCCTTCATCAAGGTCGTCAACTACAACCACTTGATGCC
CACTCGCTACACCCTTGAGCTCGAGGGTCTTAAGGGTGCCGTCTCCACCG
AGACCTTCAAGGAGGTTTCCACCCGCGAGGACGCCAAGAAGAACGTCAAG
AAGGCCCTTGAGGACCGCTACACCAGCGGCAAGAACCGTTGGTTCTTCAC
TCCTCTGCGTTTCTAAATGAAGTTCATGAAAGTGGGCCGTGTGGCCATCA
TCACCCGTGGCCGTTACGCCGGTAAGAAGGTCGTCATTGTCCAGCCTAAC
GACACTGGCTCCAAGGCGCACCCCTTCCCTTACGCCATCGTCGCCGGTAT
CGAGCGCTACCCCCTCAAGGTCACCCGCCGCATGGGTAAGAAGACCGTCG
AGAAGCGCAGCCGCATCAAGCCCTTCATCAAGGTCGTCAACTACAACCAC
TTGATGCCCACTCGCTACACCCTTGAGCTCGAGGGTCTTAAGGGTGCCGT
CTCCACCGAGACCTTCAAGGAGGTTTCCACCCGCGAGGACGCCAAGAAGA
ACGTCAAGAAGGCCCTTGAGGACCGCTACACCAGCGGCAAGAACCGTTGG
TTCTTCACTCCTCTGCGTTTCTAAATGAAGTTCATGAAAGTGGGCCGTGT
GGCCATCATCACCCGTGGCCGTTACGCCGGTAAGAAGGTCGTCATTGTCC
AGCCTAACGACACTGGCTCCAAGGCGCACCCCTTCCCTTACGCCATCGTC
GCCGGTATCGAGCGCTACCCCCTCAAGGTCACCCGCCGCATGGGTAAGAA
GACCGTCGAGAAGCGCAGCCGCATCAAGCCCTTCATCAAGGTCGTCAACT
ACAACCACTTGATGCCCACTCGCTACACCCTTGAGCTCGAGGGTCTTAAG
GGTGCCGTCTCCACCGAGACCTTCAAGGAGGTTTCCACCCGCGAGGACGC
CAAGAAGAACGTCAAGAAGGCCCTTGAGGACCGCTACACCAGCGGCAAGA
ACCGTTGGTTCTTCACTCCTCTGCGTTTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL27AATCC64974_107820Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107820-T1.exon1ATCC64974_107820-T1.exon1Aspergillus niger N402exon
ATCC64974_107820-T1.exon2ATCC64974_107820-T1.exon2Aspergillus niger N402exon
ATCC64974_107820-T1.exon3ATCC64974_107820-T1.exon3Aspergillus niger N402exon
ATCC64974_107820-T1.exon4ATCC64974_107820-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107820-T1.cdsATCC64974_107820-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107820-T1ATCC64974_107820-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR041991
DBxrefInterPro:IPR018262
DBxrefInterPro:IPR001141
DBxrefInterPro:IPR038655
DBxrefPFAM:PF01777
Product60S ribosomal protein L27A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:3818658..3819450 +
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