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ATCC64974_107890-T1, ATCC64974_107890-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_107890-T1
Unique NameATCC64974_107890-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:3839096..3839700+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_107890-T1 ID=ATCC64974_107890-T1|Name=ATCC64974_107890-T1|organism=Aspergillus niger N402|type=mRNA|length=605bp|location=Sequence derived from alignment at OGUI01000017.1:3839096..3839700+ (Aspergillus niger N402)
ATGCCGTTGACCTGTTAGTTTTCTCCTGCAGTCCCTACATCTACAGTACT
TTTTTTTTTGGCTAACTGTCACCTTTCTACTCCCCAGTCTGCCCTAATTG
CAGCAATGCGCTCACGATTTCTCGTGCGGAGCCGACCACAAGGCATCCCT
TAGGCGTTAATCGATTCGAGTGTCGCACATGCCCATACCAATATGCCCTC
GACCAGAGCTGGTTTGAGAAGACACCCATGAAACAAAAAGAAGTGGAGGA
TGTCTTTGGAGGAAAGGAAGAATTCGCAAATGCGGATAGCATGGCCAGTA
AGTTACGAACTTTGAGGGGCACTCTTCCCTACGGTTGTTGGAATAAACTT
GGGGGCTTGGGGCTAATGTTGTGCTTTCTCTTCCTTTTCCCCTACCCGCA
GCTCAATGCCCCGCAGAAGACTGTAATGGCGACCGCGCATACTTTTTCCA
GCTGCAGATTCGGAGTGCAGACGAGCCGATGACCACATTCCTAAAGGTGG
GTGCGCACCGGCGGCTTATGCGGTTCTCATGCATCTGGCCTGACATGCTT
TGCTGATTGCGGTTGACAGTGTACCACGTGTGGTGCCCGATGGAGAGAGA
ACTGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:3839096..3839700+

>ATCC64974_107890-T1 ID=ATCC64974_107890-T1|Name=ATCC64974_107890-T1|organism=Aspergillus niger N402|type=CDS|length=1416bp|location=Sequence derived from alignment at OGUI01000017.1:3839096..3839700+ (Aspergillus niger N402)
ATGCCGTTGACCTTCTGCCCTAATTGCAGCAATGCGCTCACGATTTCTCG
TGCGGAGCCGACCACAAGGCATCCCTTAGGCGTTAATCGATTCGAGTGTC
GCACATGCCCATACCAATATGCCCTCGACCAGAGCTGGTTTGAGAAGACA
CCCATGAAACAAAAAGAAGTGGAGGATGTCTTTGGAGGAAAGGAAGAATT
CGCAAATGCGGATAGCATGGCCACTCAATGCCCCGCAGAAGACTGTAATG
GCGACCGCGCATACTTTTTCCAGCTGCAGATTCGGAGTGCAGACGAGCCG
ATGACCACATTCCTAAAGTGTACCACGTGTGGTGCCCGATGGAGAGAGAA
CTGAATGCCGTTGACCTTCTGCCCTAATTGCAGCAATGCGCTCACGATTT
CTCGTGCGGAGCCGACCACAAGGCATCCCTTAGGCGTTAATCGATTCGAG
TGTCGCACATGCCCATACCAATATGCCCTCGACCAGAGCTGGTTTGAGAA
GACACCCATGAAACAAAAAGAAGTGGAGGATGTCTTTGGAGGAAAGGAAG
AATTCGCAAATGCGGATAGCATGGCCACTCAATGCCCCGCAGAAGACTGT
AATGGCGACCGCGCATACTTTTTCCAGCTGCAGATTCGGAGTGCAGACGA
GCCGATGACCACATTCCTAAAGTGTACCACGTGTGGTGCCCGATGGAGAG
AGAACTGAATGCCGTTGACCTTCTGCCCTAATTGCAGCAATGCGCTCACG
ATTTCTCGTGCGGAGCCGACCACAAGGCATCCCTTAGGCGTTAATCGATT
CGAGTGTCGCACATGCCCATACCAATATGCCCTCGACCAGAGCTGGTTTG
AGAAGACACCCATGAAACAAAAAGAAGTGGAGGATGTCTTTGGAGGAAAG
GAAGAATTCGCAAATGCGGATAGCATGGCCACTCAATGCCCCGCAGAAGA
CTGTAATGGCGACCGCGCATACTTTTTCCAGCTGCAGATTCGGAGTGCAG
ACGAGCCGATGACCACATTCCTAAAGTGTACCACGTGTGGTGCCCGATGG
AGAGAGAACTGAATGCCGTTGACCTTCTGCCCTAATTGCAGCAATGCGCT
CACGATTTCTCGTGCGGAGCCGACCACAAGGCATCCCTTAGGCGTTAATC
GATTCGAGTGTCGCACATGCCCATACCAATATGCCCTCGACCAGAGCTGG
TTTGAGAAGACACCCATGAAACAAAAAGAAGTGGAGGATGTCTTTGGAGG
AAAGGAAGAATTCGCAAATGCGGATAGCATGGCCACTCAATGCCCCGCAG
AAGACTGTAATGGCGACCGCGCATACTTTTTCCAGCTGCAGATTCGGAGT
GCAGACGAGCCGATGACCACATTCCTAAAGTGTACCACGTGTGGTGCCCG
ATGGAGAGAGAACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042779tRNA 3'-trailer cleavage
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_107890ATCC64974_107890Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107890-T1.exon1ATCC64974_107890-T1.exon1Aspergillus niger N402exon
ATCC64974_107890-T1.exon2ATCC64974_107890-T1.exon2Aspergillus niger N402exon
ATCC64974_107890-T1.exon3ATCC64974_107890-T1.exon3Aspergillus niger N402exon
ATCC64974_107890-T1.exon4ATCC64974_107890-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107890-T1.cdsATCC64974_107890-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_107890-T1ATCC64974_107890-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926539T
DBxrefInterPro:IPR034014
DBxrefInterPro:IPR012164
DBxrefInterPro:IPR001529
DBxrefInterPro:IPR001222
DBxrefPFAM:PF01096
DBxrefPFAM:PF02150
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:3839096..3839700 +
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