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ATCC64974_108790-T1, ATCC64974_108790-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_108790-T1
Unique NameATCC64974_108790-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:4106288..4107413+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_108790-T1 ID=ATCC64974_108790-T1|Name=ATCC64974_108790-T1|organism=Aspergillus niger N402|type=mRNA|length=1126bp|location=Sequence derived from alignment at OGUI01000017.1:4106288..4107413+ (Aspergillus niger N402)
ATGTCCGCCATCGAGCCAGTCGTGCGTACCGCCCCATCCCGAAACTATCA
TCCACATACAATCTCCTTGAAATTGAATACACATGTGTCAAATGAGGGCG
TCACGGTCCTGGAGTCGGAAATTCATATACCAAAGTACATTTGTCGCTGA
CTTGAATTGTTGGGTTTTCGCAGGTCGTCATTGACGGCAAGGGACACCTC
TTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACGGTCAGAA
GATCGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAGTTCTTCC
GTGCGAAGCGTATGTTCTATCCGACCCGGTTTCTTTCGATTTCATTTTGC
AATATGGATTTTCTTTGGGATGAATGGGAGTGCGACGGTTTTCGACATAT
GGAGGAGGACATCGGCAATTGATTGGAATATTTATGGAGGAACAAGCAAC
ACATGTGTGCTGGTGGACAACGGGCTGACCTGGATTTCGCGATATAGTCA
AGTACCACGCCTACCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGGA
GGTGAGACTACCCGATGACTTTCCCCCTTCGATGGGGAAAGACGACACTT
ATCTCTTTTGCGGGACTCCGTGCTGAATCGCTACAGGTCCCTTCCACTTC
CGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCCCCA
CAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCGAGG
GTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAGGCT
CTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGGTCG
TCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGGTACG
TTTATGCTGAAGTGGAGAGGATAAAATGGGAGATGTTGGAATATTGGGTG
CAGAAGGCTAACGGATTCGTTTTTTCTACTCGTACAGACTTGAGGAGCGC
AGAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCCG
CCAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAGA
GCCAGCTCGCTCAGTACGGATACTAG
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Coding sequence (CDS) from alignment at OGUI01000017.1:4106288..4107413+

>ATCC64974_108790-T1 ID=ATCC64974_108790-T1|Name=ATCC64974_108790-T1|organism=Aspergillus niger N402|type=CDS|length=3045bp|location=Sequence derived from alignment at OGUI01000017.1:4106288..4107413+ (Aspergillus niger N402)
ATGTCCGCCATCGAGCCAGTCGTCGTCATTGACGGCAAGGGACACCTCTT
GGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACGGTCAGAAGA
TCGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAGTTCTTCCGT
GCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCAACCC
CACCCGCGGAGGTCCCTTCCACTTCCGTGCCCCCTCCCGCATCTTCTACA
AGGCTGTCCGCGGCATGATCCCCCACAAGACCGCCCGTGGTGCCGCCGCT
ATGGAGCGCCTGAAGGTTTTCGAGGGTGTTCCTCCCCCCTACGACAAGAA
GAAGCGCGTTGTCGTTCCCCAGGCTCTGCGTGTTCTCCGCCTGCGCCCCG
GCCGCAAGTACTGCACCGTTGGTCGTCTCAGCCACGAGGTTGGCTGGAAG
TACCAGGACGTTGTTGCCAGACTTGAGGAGCGCAGAAAGGTTAAGAGCAG
TGCATACTACGAGCGCAAGAAGGCCGCTCGCCGCCAACTCGTCCACGCCC
AGAAGTCGGCGGGTGTTAACGAGCAGACCAAGAGCCAGCTCGCTCAGTAC
GGATACTAGATGTCCGCCATCGAGCCAGTCGTCGTCATTGACGGCAAGGG
ACACCTCTTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGCTGCTCAACG
GTCAGAAGATCGTCGTCGTGAGATGTGAAGCCCTCAACATCTCCGGCGAG
TTCTTCCGTGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCG
TTTCAACCCCACCCGCGGAGGTCCCTTCCACTTCCGTGCCCCCTCCCGCA
TCTTCTACAAGGCTGTCCGCGGCATGATCCCCCACAAGACCGCCCGTGGT
GCCGCCGCTATGGAGCGCCTGAAGGTTTTCGAGGGTGTTCCTCCCCCCTA
CGACAAGAAGAAGCGCGTTGTCGTTCCCCAGGCTCTGCGTGTTCTCCGCC
TGCGCCCCGGCCGCAAGTACTGCACCGTTGGTCGTCTCAGCCACGAGGTT
GGCTGGAAGTACCAGGACGTTGTTGCCAGACTTGAGGAGCGCAGAAAGGT
TAAGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCCGCCAACTCG
TCCACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAGAGCCAGCTC
GCTCAGTACGGATACTAGATGTCCGCCATCGAGCCAGTCGTCGTCATTGA
CGGCAAGGGACACCTCTTGGGTCGCCTGGCCAGCACTGTTGCTAAGCAGC
TGCTCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAAGCCCTCAACATC
TCCGGCGAGTTCTTCCGTGCGAAGCTCAAGTACCACGCCTACCTTCGCAA
GATGACTCGTTTCAACCCCACCCGCGGAGGTCCCTTCCACTTCCGTGCCC
CCTCCCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCCCCACAAGACC
GCCCGTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCGAGGGTGTTCC
TCCCCCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAGGCTCTGCGTG
TTCTCCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGGTCGTCTCAGC
CACGAGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGACTTGAGGAGCG
CAGAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGAAGGCCGCTCGCC
GCCAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAACGAGCAGACCAAG
AGCCAGCTCGCTCAGTACGGATACTAGATGTCCGCCATCGAGCCAGTCGT
CGTCATTGACGGCAAGGGACACCTCTTGGGTCGCCTGGCCAGCACTGTTG
CTAAGCAGCTGCTCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAAGCC
CTCAACATCTCCGGCGAGTTCTTCCGTGCGAAGCTCAAGTACCACGCCTA
CCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGGAGGTCCCTTCCACT
TCCGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGGCATGATCCCC
CACAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGAAGGTTTTCGA
GGGTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTCGTTCCCCAGG
CTCTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTGCACCGTTGGT
CGTCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTGTTGCCAGACT
TGAGGAGCGCAGAAAGGTTAAGAGCAGTGCATACTACGAGCGCAAGAAGG
CCGCTCGCCGCCAACTCGTCCACGCCCAGAAGTCGGCGGGTGTTAACGAG
CAGACCAAGAGCCAGCTCGCTCAGTACGGATACTAGATGTCCGCCATCGA
GCCAGTCGTCGTCATTGACGGCAAGGGACACCTCTTGGGTCGCCTGGCCA
GCACTGTTGCTAAGCAGCTGCTCAACGGTCAGAAGATCGTCGTCGTGAGA
TGTGAAGCCCTCAACATCTCCGGCGAGTTCTTCCGTGCGAAGCTCAAGTA
CCACGCCTACCTTCGCAAGATGACTCGTTTCAACCCCACCCGCGGAGGTC
CCTTCCACTTCCGTGCCCCCTCCCGCATCTTCTACAAGGCTGTCCGCGGC
ATGATCCCCCACAAGACCGCCCGTGGTGCCGCCGCTATGGAGCGCCTGAA
GGTTTTCGAGGGTGTTCCTCCCCCCTACGACAAGAAGAAGCGCGTTGTCG
TTCCCCAGGCTCTGCGTGTTCTCCGCCTGCGCCCCGGCCGCAAGTACTGC
ACCGTTGGTCGTCTCAGCCACGAGGTTGGCTGGAAGTACCAGGACGTTGT
TGCCAGACTTGAGGAGCGCAGAAAGGTTAAGAGCAGTGCATACTACGAGC
GCAAGAAGGCCGCTCGCCGCCAACTCGTCCACGCCCAGAAGTCGGCGGGT
GTTAACGAGCAGACCAAGAGCCAGCTCGCTCAGTACGGATACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CRP46ATCC64974_108790Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108790-T1ATCC64974_108790-T1-proteinAspergillus niger N402polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108790-T1.exon1ATCC64974_108790-T1.exon1Aspergillus niger N402exon
ATCC64974_108790-T1.exon2ATCC64974_108790-T1.exon2Aspergillus niger N402exon
ATCC64974_108790-T1.exon3ATCC64974_108790-T1.exon3Aspergillus niger N402exon
ATCC64974_108790-T1.exon4ATCC64974_108790-T1.exon4Aspergillus niger N402exon
ATCC64974_108790-T1.exon5ATCC64974_108790-T1.exon5Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108790-T1.cdsATCC64974_108790-T1.cdsAspergillus niger N402CDS


Properties
Property NameValue
DBxrefInterPro:IPR023563
DBxrefInterPro:IPR005755
DBxrefInterPro:IPR036899
DBxrefInterPro:IPR005822
DBxrefPFAM:PF00572
Product60S ribosomal protein L16
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:4106288..4107413 +
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