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ATCC64974_109190-T1, ATCC64974_109190-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_109190-T1
Unique NameATCC64974_109190-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:4234332..4235609+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_109190-T1 ID=ATCC64974_109190-T1|Name=ATCC64974_109190-T1|organism=Aspergillus niger N402|type=mRNA|length=1278bp|location=Sequence derived from alignment at OGUI01000017.1:4234332..4235609+ (Aspergillus niger N402)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCAGTACGTCCGCCCGATATTTCATTTTGCATTTGATTCCAGATCCTGT
GTGTTGTGTTGGAAAAGGCCGGAAATTGGAGATTGGAAGAATCGACCGGG
GAAAAGAATGGTGATCCGGGAGGAGGAAAAGAAAAACAGTTATCGGGAAT
ACGGCCGGGAATATCAACCAACCACGGGGAACTACTGGAATTGGAGACAA
TTTTATATACAAAGGAAGATGGAATATGTGCCAGTTGCTAACGGATGCTT
TCTTTACAGTCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAG
GGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTT
CCCCGAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTC
TCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGT
CTGGCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAG
CGGTGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCC
GTGCCAAGTCCATGAAGTTCACTGTACGTCTACCAACAGCGATTGATTTT
GTTTTTCGAATGGTCGGATCGGTCCCGAAGCAGTGGTGGAATTTGCGCAT
ATCCAACGACAACGATGCCTACTACGATCTGCAACAACGAAGCAACTGTG
CAAAGGACCGGACCGAAGCTCTACACCATTCGAAACACTCCATCATATGC
ATGCTATAACGGTATCAGAAAACTAACAACAATTCTTCTCAATAGGACGG
TTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCGCTA
CCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATC
ATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCC
CGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGC
CCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCC
GAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGC
CGGTGCCGAGGCTTACGCCCAGGAGTAA
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Coding sequence (CDS) from alignment at OGUI01000017.1:4234332..4235609+

>ATCC64974_109190-T1 ID=ATCC64974_109190-T1|Name=ATCC64974_109190-T1|organism=Aspergillus niger N402|type=CDS|length=2403bp|location=Sequence derived from alignment at OGUI01000017.1:4234332..4235609+ (Aspergillus niger N402)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGCCG
CCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCG
AGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCTCC
GCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGTCTGGC
CGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGGTG
CCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTGCC
AAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGC
CAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTG
TCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCAAG
GCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCCAA
GGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAAGG
CTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAG
GCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTA
AATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCG
ACGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCT
GAGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGA
CATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGCC
GCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCC
GAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCTC
CGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGTCTGG
CCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGGT
GCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTGC
CAAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCG
CCAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGGT
GTCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCAA
GGCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCCA
AGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAAG
GCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCA
GGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGT
AAATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCC
GACGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGC
TGAGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCG
ACATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGC
CGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCC
CGAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCT
CCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGTCTG
GCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGG
TGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTG
CCAAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCC
GCCAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGG
TGTCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCA
AGGCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCC
AAGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAA
GGCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGC
AGGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAG
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS3ATCC64974_109190Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109190-T1.exon1ATCC64974_109190-T1.exon1Aspergillus niger N402exon
ATCC64974_109190-T1.exon2ATCC64974_109190-T1.exon2Aspergillus niger N402exon
ATCC64974_109190-T1.exon3ATCC64974_109190-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109190-T1.cdsATCC64974_109190-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109190-T1ATCC64974_109190-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092647L7
DBxrefInterPro:IPR009019
DBxrefInterPro:IPR018280
DBxrefInterPro:IPR001351
DBxrefInterPro:IPR036419
DBxrefInterPro:IPR015946
DBxrefInterPro:IPR005703
DBxrefInterPro:IPR004044
DBxrefPFAM:PF00189
DBxrefPFAM:PF07650
Product40S ribosomal protein S3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:4234332..4235609 +
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