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ATCC64974_109310-T1, ATCC64974_109310-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_109310-T1
Unique NameATCC64974_109310-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:4263721..4264952-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_109310-T1 ID=ATCC64974_109310-T1|Name=ATCC64974_109310-T1|organism=Aspergillus niger N402|type=mRNA|length=1232bp|location=Sequence derived from alignment at OGUI01000017.1:4263721..4264952- (Aspergillus niger N402)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGGTAC
GTCCACCAACCACATACATCCATCACCATCTCATCCCCCTCCCAAATCCA
ACTTCTACCCTACAAACTAACAAGACGAAATATAGACCGGCCCCCCTCCC
TCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGGCACTCCTCAAC
CCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCATCAA
CGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCCTCAC
ACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCGCCACCACC
ACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGCGCTC
CCAACAACCACCACCATCTACTCACACCAACGTAAACAAATACCGCCCCT
TCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAATGTCC
CAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACTATGATGGCCGG
CGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCATGGA
ATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCCATCT
TCATCATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAACCCT
CCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCACCGGTTCAGCGC
ATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGCAT
ATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAGCA
GGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAAGG
GACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTAGA
CGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTCCGGGCGGCGTG
CTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTGTT
TGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTGGG
AGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCTAG
AAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGGGA
CGCCTACGCCTACACCGACGCCGGGGCCGTGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:4263721..4264952-

>ATCC64974_109310-T1 ID=ATCC64974_109310-T1|Name=ATCC64974_109310-T1|organism=Aspergillus niger N402|type=CDS|length=2286bp|location=Sequence derived from alignment at OGUI01000017.1:4263721..4264952- (Aspergillus niger N402)
ACCGGCCCCCCTCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCC
TGGGCACTCCTCAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACAT
CCTCGTCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAG
CCGTGGTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAA
AAAGCCGCCACCACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGA
CATCTCCATGCGCTCCCAACAACCACCACCATCTACTCACACCAACGTAA
ACAAATACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTC
CACAACCTAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTC
GACTATGATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCC
GCACGTTAGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAAC
CCCAATGACCCATCTTCATCATCCTCCTCATCACATAATACAAAGGGTAC
TGCGGAATCAACCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCT
CCACCGGTTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCT
TGCCAGAGGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGC
GGTATTCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGT
TGGATGAGCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCG
GATCAGAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGA
TTTCCGGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTG
TGTGTTCGATTTGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTG
TGTTTGACTTGTGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCC
GGCGGTGGTGGCTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGA
TGTCTGCGGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAATG
AATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCGGCC
CCCCTCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGGCAC
TCCTCAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTCGTC
TTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGT
ATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCG
CCACCACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATCTCC
ATGCGCTCCCAACAACCACCACCATCTACTCACACCAACGTAAACAAATA
CCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACC
TAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACTATG
ATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTT
AGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATG
ACCCATCTTCATCATCCTCCTCATCACATAATACAAAGGGTACTGCGGAA
TCAACCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCACCGG
TTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGA
GGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTC
CTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGA
GCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGA
GGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTCCGG
GCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTC
GATTTGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGA
CTTGTGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCGGTG
GTGGCTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGC
GGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAATGAATACCA
TCGACGCAACAGAACACTACGAAACCAGCGCCCACG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_109310ATCC64974_109310Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109310-T1ATCC64974_109310-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109310-T1.cdsATCC64974_109310-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_109310-T1.exon2ATCC64974_109310-T1.exon2Aspergillus niger N402exon
ATCC64974_109310-T1.exon1ATCC64974_109310-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG0926369X
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR004600
DBxrefPFAM:PF03850
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:4263721..4264952 -
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