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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000002.1:1177297..1178132- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_11230-T1 ID=ATCC64974_11230-T1|Name=ATCC64974_11230-T1|organism=Aspergillus niger N402|type=mRNA|length=836bp|location=Sequence derived from alignment at OGUI01000002.1:1177297..1178132- (Aspergillus niger N402)
ATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGC
CACAACCATCTACCTGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTG
GTTCCGACACAGCAGGTACTTTCCCACCTACACCATCACACCTTCATCCA
CTAACAAACAATCAGGCTGGGGTGACTACGTCGCCCAATACCTGAGCAAC
TCAAGCGGCATCACCGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACG
GTCCTACACGCGCGAAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAG
CGGGCGACTACGTGATCATCGAGTTCGGTCACAACGACGGCGGCACGCTC
AGCTCGACCAGCGACAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGA
AGTATGCTACTCGGAATACGACGGCGTCAATGAAACCATCCTCACCTTCC
CTGCATACCTCGAGAACGCCGCCAATACATTCAAAAAAATCGGCGCGACC
GTCATCATCTCTTCGCAGACGCCCGATAACCCCTGGGAAACAGGCACTTT
CGTGGATGACCCGCCGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACA
CGGCGGATACGTCGTACGTGAATCATTTTGCCTATGTGGATCAGGTGTAT
GAGGCGTTGGGAGCGGATACCGTGGATGCATTTTATCCGATTGATCATAC
GCATACGAGTCCGGCGGGGGCGGATGTTGTTGCTAAGGCGTTTCTGAGGG
GTGTGGTCTGTGGAAAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGAT
TTGGAGTTGGATGAGTATGAATGTTTGGATGAGTAG back to topCoding sequence (CDS) from alignment at OGUI01000002.1:1177297..1178132- >ATCC64974_11230-T1 ID=ATCC64974_11230-T1|Name=ATCC64974_11230-T1|organism=Aspergillus niger N402|type=CDS|length=1572bp|location=Sequence derived from alignment at OGUI01000002.1:1177297..1178132- (Aspergillus niger N402)
GCTGGGGTGACTACGTCGCCCAATACCTGAGCAACTCAAGCGGCATCACC
GTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACGGTCCTACACGCGCGA
AGGCCGGTTCGACGACATCGCCAGCACCCTTGAAGCGGGCGACTACGTGA
TCATCGAGTTCGGTCACAACGACGGCGGCACGCTCAGCTCGACCAGCGAC
AACGGCCGCACCGACTGTTCCGGCACGGGCTCCGAAGTATGCTACTCGGA
ATACGACGGCGTCAATGAAACCATCCTCACCTTCCCTGCATACCTCGAGA
ACGCCGCCAATACATTCAAAAAAATCGGCGCGACCGTCATCATCTCTTCG
CAGACGCCCGATAACCCCTGGGAAACAGGCACTTTCGTGGATGACCCGCC
GCGGTTCGTCGAATACGCGGAGATCGCGGCGGACACGGCGGATACGTCGT
ACGTGAATCATTTTGCCTATGTGGATCAGGTGTATGAGGCGTTGGGAGCG
GATACCGTGGATGCATTTTATCCGATTGATCATACGCATACGAGTCCGGC
GGGGGCGGATGTTGTTGCTAAGGCGTTTCTGAGGGGTGTGGTCTGTGGAA
AGTTGAGCTTGGCGGATGAGCTTGTGACGGATGATTTGGAGTTGGATGAG
TATGAATGTTTGGATGAGTAGATGAAGGTCTCCAGCCTCCCCATCTTAGC
CTTCCTCCCTACCTCCCTCGCCACAACCATCTACCTGGCGGGGGACTCCA
CCATGGCCACTGGCGGCGGTGGTTCCGACACAGCAGGCTGGGGTGACTAC
GTCGCCCAATACCTGAGCAACTCAAGCGGCATCACCGTGTCCAACCAAGC
CGTAGCCGGGCGCAGCGCACGGTCCTACACGCGCGAAGGCCGGTTCGACG
ACATCGCCAGCACCCTTGAAGCGGGCGACTACGTGATCATCGAGTTCGGT
CACAACGACGGCGGCACGCTCAGCTCGACCAGCGACAACGGCCGCACCGA
CTGTTCCGGCACGGGCTCCGAAGTATGCTACTCGGAATACGACGGCGTCA
ATGAAACCATCCTCACCTTCCCTGCATACCTCGAGAACGCCGCCAATACA
TTCAAAAAAATCGGCGCGACCGTCATCATCTCTTCGCAGACGCCCGATAA
CCCCTGGGAAACAGGCACTTTCGTGGATGACCCGCCGCGGTTCGTCGAAT
ACGCGGAGATCGCGGCGGACACGGCGGATACGTCGTACGTGAATCATTTT
GCCTATGTGGATCAGGTGTATGAGGCGTTGGGAGCGGATACCGTGGATGC
ATTTTATCCGATTGATCATACGCATACGAGTCCGGCGGGGGCGGATGTTG
TTGCTAAGGCGTTTCTGAGGGGTGTGGTCTGTGGAAAGTTGAGCTTGGCG
GATGAGCTTGTGACGGATGATTTGGAGTTGGATGAGTATGAATGTTTGGA
TGAGTAGATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCTACCT
CCCTCGCCACAACCATCTACCTGGCGGGGGACTCCACCATGGCCACTGGC
GGCGGTGGTTCCGACACAGCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_11230-T1 | ATCC64974_11230-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-17) |
| Note | CAZy:CE12 |
| DBxref | InterPro:IPR037459 |
| DBxref | InterPro:IPR013830 |
| DBxref | InterPro:IPR036514 |
| DBxref | PFAM:PF13472 |
| DBxref | PFAM:PF00657 |
| Product | Rhamnogalacturonan acetylesterase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000002.1 | supercontig | OGUI01000002.1:1177297..1178132 - |
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