You are here

Home

ATCC64974_12140-T1, ATCC64974_12140-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_12140-T1
Unique NameATCC64974_12140-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:248255..248926-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_12140-T1 ID=ATCC64974_12140-T1|Name=ATCC64974_12140-T1|organism=Aspergillus niger N402|type=mRNA|length=672bp|location=Sequence derived from alignment at OGUI01000003.1:248255..248926- (Aspergillus niger N402)
ATGGTCAAGACTTCCGTCCTCAACGATGCGCTTAACGCCATCAACAACGC
CGAGAAGAGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCCTCCAAGGTCA
TCATCAAGTTCCTTTCCGTCATGCAGAAGCACGGTACGTTCATGTCTACA
ACATCACCAACATCGTGAAACAAGGAGTTCCGGGCACTTGCAAGGTCGAG
CCGCCAAGGAGGTGATGAAAAATTCGGGTTGATAACTAGGCGACGGTTAT
AGACCAACCACGGCTTTCGCCCTTTAAGTGCCCGAGATATTGACAAGTGT
TGTTTACAACATGGCGGCGATCTTACAAGTTTCCGGAACTCTTTATTTCT
TCTGTGTTTGGTTAACTTTTAAATCACCGCAACAAATTGCTGACTCTTTT
TTCCTTCTTCAGGCTACATTGGCGAGTTCGAGGAGGTTGACGACCACCGC
TCCGGCAAGATCGTCATCCAGCTCAACGGCCGTCTGAACAAGTGCGGTGT
CATCAACCCCCGCTACCCCGTTCAGCTCCGTGACCTCGAGAAGTGGGCCA
CTCAGCTCCTGCCCTCCCGTCAGTTCGGTTACGTTGTCCTGACCACCTCC
GCTGGTATCATGGACCACGAGGAGGCTCGCCGCAAGCACGTTGCCGGCAA
GCTCCTCGGTTTCTTCTACTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:248255..248926-

>ATCC64974_12140-T1 ID=ATCC64974_12140-T1|Name=ATCC64974_12140-T1|organism=Aspergillus niger N402|type=CDS|length=786bp|location=Sequence derived from alignment at OGUI01000003.1:248255..248926- (Aspergillus niger N402)
GCTACATTGGCGAGTTCGAGGAGGTTGACGACCACCGCTCCGGCAAGATC
GTCATCCAGCTCAACGGCCGTCTGAACAAGTGCGGTGTCATCAACCCCCG
CTACCCCGTTCAGCTCCGTGACCTCGAGAAGTGGGCCACTCAGCTCCTGC
CCTCCCGTCAGTTCGGTTACGTTGTCCTGACCACCTCCGCTGGTATCATG
GACCACGAGGAGGCTCGCCGCAAGCACGTTGCCGGCAAGCTCCTCGGTTT
CTTCTACTAAATGGTCAAGACTTCCGTCCTCAACGATGCGCTTAACGCCA
TCAACAACGCCGAGAAGAGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCC
TCCAAGGTCATCATCAAGTTCCTTTCCGTCATGCAGAAGCACGGCTACAT
TGGCGAGTTCGAGGAGGTTGACGACCACCGCTCCGGCAAGATCGTCATCC
AGCTCAACGGCCGTCTGAACAAGTGCGGTGTCATCAACCCCCGCTACCCC
GTTCAGCTCCGTGACCTCGAGAAGTGGGCCACTCAGCTCCTGCCCTCCCG
TCAGTTCGGTTACGTTGTCCTGACCACCTCCGCTGGTATCATGGACCACG
AGGAGGCTCGCCGCAAGCACGTTGCCGGCAAGCTCCTCGGTTTCTTCTAC
TAAATGGTCAAGACTTCCGTCCTCAACGATGCGCTTAACGCCATCAACAA
CGCCGAGAAGAGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCCTCCAAGG
TCATCATCAAGTTCCTTTCCGTCATGCAGAAGCACG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CRP27ATCC64974_12140Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12140-T1ATCC64974_12140-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12140-T1.cdsATCC64974_12140-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12140-T1.exon2ATCC64974_12140-T1.exon2Aspergillus niger N402exon
ATCC64974_12140-T1.exon1ATCC64974_12140-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR035987
DBxrefInterPro:IPR000630
DBxrefPFAM:PF00410
Product40S ribosomal protein S22
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:248255..248926 -
Powered by Drupal