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ATCC64974_12900-T1, ATCC64974_12900-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_12900-T1
Unique NameATCC64974_12900-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:485676..486651-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_12900-T1 ID=ATCC64974_12900-T1|Name=ATCC64974_12900-T1|organism=Aspergillus niger N402|type=mRNA|length=976bp|location=Sequence derived from alignment at OGUI01000003.1:485676..486651- (Aspergillus niger N402)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACGTAG
GTGCTTCCCAATCCATCGCGATTTTGATTGTTCTACGAGCATGGGTTTAT
GTCGACCGGTGGAAAAAACGCCATTATCTGTTGGAAGACAGTGGACTCGG
CATGCAGGGAGGAAAACGCACGACAATTCGGGATATCTGCGAAGGGAATC
ACGATGGAAAATTTTTTTGCGAAATGGCACAGAAACGAGATATGCTGACT
CGGCTTCACGTTCAATAGCGACTACGTCCAGATCCGCTCCCCTGTCTACC
TTCCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAG
TGCCCCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAA
CAACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGA
TCGTACGTCACCTATTTTCTGCCCCCATTGCCTTCCGCACGCAGAACGGC
TAGGGTCCGCAAAATCCCAGAACCAGACGCAGAAAGCTGACCGGGTAATC
TTTTCTAGATCCACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTT
GACGCCATTGTCAACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTC
CGCTGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTG
TCAACCAGGCTATTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTC
CGTAACATCAAGAGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGC
CGCCAAGGGTTCCTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCG
AGCGTGTTGCCAAGTCCAACCGGTAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:485676..486651-

>ATCC64974_12900-T1 ID=ATCC64974_12900-T1|Name=ATCC64974_12900-T1|organism=Aspergillus niger N402|type=CDS|length=1944bp|location=Sequence derived from alignment at OGUI01000003.1:485676..486651- (Aspergillus niger N402)
ATCCACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTTGACGCCAT
TGTCAACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTCCGCTGGTA
CCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTGTCAACCAG
GCTATTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTCCGTAACAT
CAAGAGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGCCGCCAAGG
GTTCCTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCGAGCGTGTT
GCCAAGTCCAACCGGTAACGACTACGTCCAGATCCGCTCCCCTGTCTACC
TTCCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAG
TGCCCCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAA
CAACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGA
TCATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTC
CAGGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTT
CAACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACAT
CCACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTTGACGCCATTG
TCAACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTCCGCTGGTACC
GTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTGTCAACCAGGC
TATTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTCCGTAACATCA
AGAGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGCCGCCAAGGGT
TCCTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCGAGCGTGTTGC
CAAGTCCAACCGGTAACGACTACGTCCAGATCCGCTCCCCTGTCTACCTT
CCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAGTG
CCCCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAACA
ACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGATC
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACATCC
ACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTTGACGCCATTGTC
AACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTCCGCTGGTACCGT
CCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTGTCAACCAGGCTA
TTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTCCGTAACATCAAG
AGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGCCGCCAAGGGTTC
CTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCGAGCGTGTTGCCA
AGTCCAACCGGTAACGACTACGTCCAGATCCGCTCCCCTGTCTACCTTCC
TCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAGTGCC
CCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAACAAC
GGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGATCAT
GTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGG
TCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAAC
AAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS5ATCC64974_12900Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12900-T1ATCC64974_12900-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12900-T1.cdsATCC64974_12900-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_12900-T1.exon3ATCC64974_12900-T1.exon3Aspergillus niger N402exon
ATCC64974_12900-T1.exon2ATCC64974_12900-T1.exon2Aspergillus niger N402exon
ATCC64974_12900-T1.exon1ATCC64974_12900-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteantiSMASH:Cluster_10000031.2
DBxrefInterPro:IPR020606
DBxrefInterPro:IPR023798
DBxrefInterPro:IPR036823
DBxrefInterPro:IPR000235
DBxrefInterPro:IPR005716
DBxrefPFAM:PF00177
Productribosomal protein S5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:485676..486651 -
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