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ATCC64974_13130-T1, ATCC64974_13130-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_13130-T1
Unique NameATCC64974_13130-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:585680..588025-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_13130-T1 ID=ATCC64974_13130-T1|Name=ATCC64974_13130-T1|organism=Aspergillus niger N402|type=mRNA|length=2346bp|location=Sequence derived from alignment at OGUI01000003.1:585680..588025- (Aspergillus niger N402)
ATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAGGCTAATGC
GCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCACCAGGCCC
AGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGGATTCTAAC
GGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTAT
CAAGCCCGAGTATGTGATTGATCTAAATCTGTTTGCGATGCGCCCGCTCT
AACCGACTTCCTCTGCTAGGTTTATTATCGACCAACAACCCACGAGAGGC
CAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACACCA
CGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGACTG
GTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGATTG
TGCTCTAGTGTCAACTTCAGGCCTGAATTTTCTCCTGCCGAGTGCACTTT
CGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGAGC
ATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGGAT
GTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCACA
CTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTATTG
AGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTGGA
GAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTGGC
GAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCTGG
AAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTGCT
GCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAATC
TAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTACG
TTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGACCC
GAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTCCG
AAGACTTTGCGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGCCA
TGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGCGA
GCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGACAT
CGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGATTG
CAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTAAA
GTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATTGA
CCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTCGA
AGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATTCCT
ATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGCCTT
GAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCTTC
ATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTAGC
AGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGAATG
TGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGATA
CCATCCGGGAGCCTGACGCCCGGACGCAGCCAAACGGCGGGAAGGTTTAC
TTCCTGGGTAACGGTGACTGCTATTCTCATGTTGACTACGATAACCACAT
CAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGATCA
AGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGTCT
GCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTGGA
GGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTTGA
TGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCGAG
CATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGGAA
TGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAAGA
TCTCGTAAGTACCTTCTCCTGACCGGCTCACTCTTTCGAACTCATTCTAA
CAGCCTTCTAGGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTT
CGAGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:585680..588025-

>ATCC64974_13130-T1 ID=ATCC64974_13130-T1|Name=ATCC64974_13130-T1|organism=Aspergillus niger N402|type=CDS|length=6687bp|location=Sequence derived from alignment at OGUI01000003.1:585680..588025- (Aspergillus niger N402)
GGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAAGC
ACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAGTTTATTATCGACCA
ACAACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTG
CGGAAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAG
AAAAAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGA
GGATGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTTTCTC
CTGCCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGC
ACATACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCAT
GTGTCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTC
GTTTTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAA
GAGTTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCT
TGTTCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGG
ATAAGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCG
TATAGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCA
CAAACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGT
CTAAGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAG
AACCGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCG
ACTGTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAG
GCAATATGCCTTTCCGAAGACTTTGCGTCGAGCTTGGCGCACAATTTACC
TATTCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGA
GTGGGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGC
TGCCCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAG
TTTGGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTAC
AGAGGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACT
GTGGCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTT
CTGGAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGT
TTCGGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACA
ACAATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTAC
GAAACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCAC
TCTTCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGG
AATACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACT
GACGCGGTGACGGATACCATCCGGGAGCCTGACGCCCGGACGCAGCCAAA
CGGCGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTATTCTCATGTTG
ACTACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGT
CGCGGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCA
GTACCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCT
GTAAGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACG
ACTAGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACC
TATCGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGG
CTTTCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTAC
AAGGATTGGCTCAAGATCTCATGGAGCCGACAACCGCTCAGGAACAGCTG
CCCGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGC
CGCTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCG
ATGATTCGGCGGATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGT
ATGAAGGGCGTTGCTCCTATCAAGCCCGAGGAGATGTTCCTCGGACCGGC
TCATAAGGACTTCAAGTTCGAGCCCAAGCACAAGTCCAACTCGTATGACG
AAGCGGAGGGTTAAGTTTATTATCGACCAACAACCCACGAGAGGCCAGAC
CGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACACCACGACG
GGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGACTGGTCAG
AATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGATTGTGCTC
TAGTGTCAACTTCAGGCCTGAATTTTCTCCTGCCGAGTGCACTTTCGGTG
AAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGAGCATAAG
CGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGGATGTCCA
CGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCACACTCGG
AGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTATTGAGGAT
GAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTGGAGAGGA
TGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTGGCGAGGA
GGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCTGGAAAAC
ACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTGCTGCGCC
CGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAATCTAAGG
ATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTACGTTGAG
CCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGACCCGAAAC
ACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTCCGAAGAC
TTTGCGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGCCATGAGC
TTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGCGAGCCCA
TGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGACATCGTGC
AGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGATTGCAGCA
AACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTAAAGTTAC
TCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATTGACCTCG
TCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTCGAAGCTC
GAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATTCCTATCAC
GGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGCCTTGAAAC
TGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCTTCATCAC
GACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTAGCAGACA
GCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGAATGTGCCG
CCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGATACCATC
CGGGAGCCTGACGCCCGGACGCAGCCAAACGGCGGGAAGGTTTACTTCCT
GGGTAACGGTGACTGCTATTCTCATGTTGACTACGATAACCACATCAACA
ATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGATCAAGCCT
TGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGTCTGCTAC
GGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTGGAGGCAT
GGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTTGATGGAA
TGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCGAGCATCT
TCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGGAATGAGC
TTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAAGATCTCA
TGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAGGCTAATGCG
CCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCACCAGGCCCA
GGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGGATTCTAACG
GACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTATC
AAGCCCGAGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGA
GCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAGTTTATT
ATCGACCAACAACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGA
CGATGCTGCGGAAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATG
GAAAGAAGAAAAAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGT
CGATCCGAGGATGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGA
ATTTTCTCCTGCCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATG
ACCTGCGCACATACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTC
AATGGCATGTGTCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTG
GAAATGTCGTTTTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATG
GAAGGAAAGAGTTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTT
CAGCGGCTTGTTCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTC
GATGGAGGATAAGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAG
CTGGGCCGTATAGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAG
GAGCTCCACAAACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGA
TGGAGAGTCTAAGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAA
AGGAGGAGAACCGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAG
AAGCGCCGACTGTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGAC
TACCCAAGGCAATATGCCTTTCCGAAGACTTTGCGTCGAGCTTGGCGCAC
AATTTACCTATTCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAAC
AAGTCGGAGTGGGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCC
CACGATGCTGCCCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGG
ACATGAAGTTTGGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTC
AAGGCTACAGAGGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGA
TCTGAACTGTGGCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCT
CTGCTCTTCTGGAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATG
AACACTGTTTCGGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAAC
GAAGGACAACAATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTG
GGGGCTACGAAACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCG
GCTATCACTCTTCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGC
TGATTGGGAATACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACG
AGAAGACTGACGCGGTGACGGATACCATCCGGGAGCCTGACGCCCGGACG
CAGCCAAACGGCGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTATTC
TCATGTTGACTACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTA
TGCTTGGTCGCGGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAG
GCGGGCCAGTACCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGA
GAAGTTCTGTAAGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTG
TTGGTACGACTAGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGC
TATGTACCTATCGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCG
GCCCCCGGCTTTCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTG
CCAACTACAAGGATTGGCTCAAGATCTCATGGAGCCGACAACCGCTCAGG
AACAGCTGCCCGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAAT
GGCGATGCCGCTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGC
CAGACTCGATGATTCGGCGGATTCTAACGGACAGACGGCTGATGCGCCCG
CCCCGCGTATGAAGGGCGTTGCTCCTATCAAGCCCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DUS3ATCC64974_13130Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13130-T1ATCC64974_13130-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13130-T1.cdsATCC64974_13130-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13130-T1.exon3ATCC64974_13130-T1.exon3Aspergillus niger N402exon
ATCC64974_13130-T1.exon2ATCC64974_13130-T1.exon2Aspergillus niger N402exon
ATCC64974_13130-T1.exon1ATCC64974_13130-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09261ZPW
DBxrefInterPro:IPR035587
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR018517
DBxrefInterPro:IPR013785
DBxrefInterPro:IPR001269
DBxrefPFAM:PF01207
ProducttRNA-dihydrouridine synthase 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:585680..588025 -
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