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ATCC64974_13420-T1, ATCC64974_13420-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_13420-T1
Unique NameATCC64974_13420-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:692684..693828-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_13420-T1 ID=ATCC64974_13420-T1|Name=ATCC64974_13420-T1|organism=Aspergillus niger N402|type=mRNA|length=1145bp|location=Sequence derived from alignment at OGUI01000003.1:692684..693828- (Aspergillus niger N402)
ATGGTGAGTGCTATATTCGCGTTTGATGCTATCGGTGGAAAATGGACATG
TCAAAAAAGCAAGGGAACAATATCCTGAAAGAAAGAACCGCTGCCCAACC
TTTCGTTGTACCGGAATCCCTATCTATCATTTTCGATCCTGCGTTTTGGC
CGTTGAAGGAGAAAAAAAAAAGACTTCATACCGAACGATTTTCGACCTTC
CCCTGCTATGATGAACTTCCGTCCACCGATATGCTATGTTATATGGAATT
GTGTGCTTGGAAAGAGGATATGAATGACATGCGAGGGATTGAATGAATGG
TCTTGCTGATTGTTGGATTTTGTCGCCATCAGGTCCGTTACGCTGCTCAG
GAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGGGCTCTTACCTGCGTGT
CAGCTTCAAGAACACCCGTGAGACCGCTCAGGCCATCAACGGCATGAAGC
TGCAGCGCGCCCTTACCTTCCTCAACAACGTCACCGAAAAGGCTGAGGCT
GTCCCCATGCGTCGGTACGCTGGCAGCACCGGTCGCTGCGCTCAGGGTGA
GTGGATGTGTTTTTCTACGTTGAAGATTTTGGAAAAGAGACGGAAGTGAA
AACAACGGATCGACAAGTGAACCGACATTGGCAGAATGTTTAGGGATGAA
GAGGCTGGATGGATACTTTTTTTTGGAGGATATGGCAAAAATCAAACTTT
TTGGCAAACGAAGACGCTGACCGTCTTCTTTCTCTTTAGGCAAGCAGTGG
GGTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCGCCGAGTTCCTTCTCGA
CCTCCTGAAGAACGCTGAGGCCAACGCCGACACCAAGGGTCTCGACACCG
GCAACCTCGTTGTCAAGCACATCCAGGTCAACCAGGCTCCCAAGGGCCGC
CGCCGCACCTACCGTGCTCACGGTCGTGTATGTTGAAGCCGGAATCCGAG
ACATCCCTCCGTCACGAATCCCCGCAAAACTAACAATTCGATTAGATCAA
CCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTTACCGAGGGTG
AGGAGACCGTCGCCAAGGGTCCCGCTGTCAAGGAGGTCCGCCTCAGCTCC
CGCCAGCGTGGTGCTCAGCTCCGCCGTGCTCTCATTGAGGCATAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:692684..693828-

>ATCC64974_13420-T1 ID=ATCC64974_13420-T1|Name=ATCC64974_13420-T1|organism=Aspergillus niger N402|type=CDS|length=2220bp|location=Sequence derived from alignment at OGUI01000003.1:692684..693828- (Aspergillus niger N402)
ATCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTTACCGA
GGGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCAAGGAGGTCCGCCTCA
GCTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCTCTCATTGAGGCATAA
GCAAGCAGTGGGGTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCGCCGAG
TTCCTTCTCGACCTCCTGAAGAACGCTGAGGCCAACGCCGACACCAAGGG
TCTCGACACCGGCAACCTCGTTGTCAAGCACATCCAGGTCAACCAGGCTC
CCAAGGGCCGCCGCCGCACCTACCGTGCTCACGGTCGTGTCCGTTACGCT
GCTCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGGGCTCTTACCT
GCGTGTCAGCTTCAAGAACACCCGTGAGACCGCTCAGGCCATCAACGGCA
TGAAGCTGCAGCGCGCCCTTACCTTCCTCAACAACGTCACCGAAAAGGCT
GAGGCTGTCCCCATGCGTCGGTACGCTGGCAGCACCGGTCGCTGCGCTCA
GGATGATCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCATCCTT
ACCGAGGGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCAAGGAGGTCCG
CCTCAGCTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCTCTCATTGAGG
CATAAGCAAGCAGTGGGGTGTCAGCAAGGCTCGTTGGCCCGTCAAGTCCG
CCGAGTTCCTTCTCGACCTCCTGAAGAACGCTGAGGCCAACGCCGACACC
AAGGGTCTCGACACCGGCAACCTCGTTGTCAAGCACATCCAGGTCAACCA
GGCTCCCAAGGGCCGCCGCCGCACCTACCGTGCTCACGGTCGTGTCCGTT
ACGCTGCTCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGGGCTCT
TACCTGCGTGTCAGCTTCAAGAACACCCGTGAGACCGCTCAGGCCATCAA
CGGCATGAAGCTGCAGCGCGCCCTTACCTTCCTCAACAACGTCACCGAAA
AGGCTGAGGCTGTCCCCATGCGTCGGTACGCTGGCAGCACCGGTCGCTGC
GCTCAGGATGATCAACCCCTACATGACCAACCCCTGCCACATCGAGCTCA
TCCTTACCGAGGGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCAAGGAG
GTCCGCCTCAGCTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCTCTCAT
TGAGGCATAAGCAAGCAGTGGGGTGTCAGCAAGGCTCGTTGGCCCGTCAA
GTCCGCCGAGTTCCTTCTCGACCTCCTGAAGAACGCTGAGGCCAACGCCG
ACACCAAGGGTCTCGACACCGGCAACCTCGTTGTCAAGCACATCCAGGTC
AACCAGGCTCCCAAGGGCCGCCGCCGCACCTACCGTGCTCACGGTCGTGT
CCGTTACGCTGCTCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGCCCGGG
GCTCTTACCTGCGTGTCAGCTTCAAGAACACCCGTGAGACCGCTCAGGCC
ATCAACGGCATGAAGCTGCAGCGCGCCCTTACCTTCCTCAACAACGTCAC
CGAAAAGGCTGAGGCTGTCCCCATGCGTCGGTACGCTGGCAGCACCGGTC
GCTGCGCTCAGGATGATCAACCCCTACATGACCAACCCCTGCCACATCGA
GCTCATCCTTACCGAGGGTGAGGAGACCGTCGCCAAGGGTCCCGCTGTCA
AGGAGGTCCGCCTCAGCTCCCGCCAGCGTGGTGCTCAGCTCCGCCGTGCT
CTCATTGAGGCATAAGCAAGCAGTGGGGTGTCAGCAAGGCTCGTTGGCCC
GTCAAGTCCGCCGAGTTCCTTCTCGACCTCCTGAAGAACGCTGAGGCCAA
CGCCGACACCAAGGGTCTCGACACCGGCAACCTCGTTGTCAAGCACATCC
AGGTCAACCAGGCTCCCAAGGGCCGCCGCCGCACCTACCGTGCTCACGGT
CGTGTCCGTTACGCTGCTCAGGAGATTCCGGCCGCTAAGAGCGCCCGCGC
CCGGGGCTCTTACCTGCGTGTCAGCTTCAAGAACACCCGTGAGACCGCTC
AGGCCATCAACGGCATGAAGCTGCAGCGCGCCCTTACCTTCCTCAACAAC
GTCACCGAAAAGGCTGAGGCTGTCCCCATGCGTCGGTACGCTGGCAGCAC
CGGTCGCTGCGCTCAGGATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL17ATCC64974_13420Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13420-T1ATCC64974_13420-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13420-T1.cdsATCC64974_13420-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_13420-T1.exon4ATCC64974_13420-T1.exon4Aspergillus niger N402exon
ATCC64974_13420-T1.exon3ATCC64974_13420-T1.exon3Aspergillus niger N402exon
ATCC64974_13420-T1.exon2ATCC64974_13420-T1.exon2Aspergillus niger N402exon
ATCC64974_13420-T1.exon1ATCC64974_13420-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR018260
DBxrefInterPro:IPR005721
DBxrefInterPro:IPR036394
DBxrefInterPro:IPR001063
DBxrefPFAM:PF00237
Product60S ribosomal protein L17
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:692684..693828 -
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