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ATCC64974_16040-T1, ATCC64974_16040-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_16040-T1
Unique NameATCC64974_16040-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:1461150..1461960+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_16040-T1 ID=ATCC64974_16040-T1|Name=ATCC64974_16040-T1|organism=Aspergillus niger N402|type=mRNA|length=811bp|location=Sequence derived from alignment at OGUI01000003.1:1461150..1461960+ (Aspergillus niger N402)
ATGAGCGTGCGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACGT
GCTGGAATACTACCAACGTACGGCGGCCCCATTCGCTTCAGACCATCTCA
ATGCGTGCTGCTAACGCGACACCAGAAATCGGACAAGAAAAGGCCCAATC
GGTCATCGATTCCATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCC
CGAATCCCGCAATGGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGCTTC
CCTGGTATGTCACATCGCCACCTACTACACCTTCAGCAACAATCAAAGCA
ATCCACAAGCTAACCACTGACATTCAGGCCGACCAGGTCAACTCCCTCCA
CCTCCCTTTGGAATGCCTCCTCTGGGCGCACCCGGCGCACCGGGCATGCC
TCCTCGTACGTTGCACCTATCCCCCACAAAGCAAACCAACACCATGAGTA
CCTAACCTTCATGAAAACAGCCCCCGGAGCAAGAGGTCTCCCCTTTCCAC
CTCCCTTCCCCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCT
CTCCCCAACATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGG
ATTCCCTCCGAACTTCCCGACCCCTCCCCCTGGTGCTGCTGCTGCCGGGT
TCCCCCCCATCCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGT
CCTACGCCCGGTATAGCTGGACCGCCGGGACAGGATGGTGGTTACGCACC
ACCGCCCGGTATGGGCGCCGGTTTGCCTGGTCCGCCTCCGGGATTGGGTG
ACAAGCGGTAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:1461150..1461960+

>ATCC64974_16040-T1 ID=ATCC64974_16040-T1|Name=ATCC64974_16040-T1|organism=Aspergillus niger N402|type=CDS|length=2460bp|location=Sequence derived from alignment at OGUI01000003.1:1461150..1461960+ (Aspergillus niger N402)
ATGAGCGTGCGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACGT
GCTGGAATACTACCAACAAATCGGACAAGAAAAGGCCCAATCGGTCATCG
ATTCCATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCCCGAATCCC
GCAATGGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGCTTCCCTGGCCG
ACCAGGTCAACTCCCTCCACCTCCCTTTGGAATGCCTCCTCTGGGCGCAC
CCGGCGCACCGGGCATGCCTCCTCCCCCCGGAGCAAGAGGTCTCCCCTTT
CCACCTCCCTTCCCCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCCC
CCCTCTCCCCAACATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCTG
GCGGATTCCCTCCGAACTTCCCGACCCCTCCCCCTGGTGCTGCTGCTGCC
GGGTTCCCCCCCATCCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCC
CAGTCCTACGCCCGGTATAGCTGGACCGCCGGGACAGGATGGTGGTTACG
CACCACCGCCCGGTATGGGCGCCGGTTTGCCTGGTCCGCCTCCGGGATTG
GGTGACAAGCGGTAAATGAGCGTGCGCAAGGCGCACAACGCCGGACGTAA
CCACCTCAGAAACGTGCTGGAATACTACCAACAAATCGGACAAGAAAAGG
CCCAATCGGTCATCGATTCCATCACCTCGTCCTACGCCGCCGAAGGCCAG
GCTGTCCCGAATCCCGCAATGGCTCCCCCGGGGGCTTACCCTCCTCCATT
TGGCTTCCCTGGCCGACCAGGTCAACTCCCTCCACCTCCCTTTGGAATGC
CTCCTCTGGGCGCACCCGGCGCACCGGGCATGCCTCCTCCCCCCGGAGCA
AGAGGTCTCCCCTTTCCACCTCCCTTCCCCGGTCCAGCAGGCGCCGCCCC
TCCTGCCGGTCTCCCCCCTCTCCCCAACATGCCCCCCGGTGCCCAGGGCT
TCCCTCCTCCGCCTGGCGGATTCCCTCCGAACTTCCCGACCCCTCCCCCT
GGTGCTGCTGCTGCCGGGTTCCCCCCCATCCCTCCCCCAGGTCAAGCTCC
AGCAGGATACAGCCCCAGTCCTACGCCCGGTATAGCTGGACCGCCGGGAC
AGGATGGTGGTTACGCACCACCGCCCGGTATGGGCGCCGGTTTGCCTGGT
CCGCCTCCGGGATTGGGTGACAAGCGGTAAATGAGCGTGCGCAAGGCGCA
CAACGCCGGACGTAACCACCTCAGAAACGTGCTGGAATACTACCAACAAA
TCGGACAAGAAAAGGCCCAATCGGTCATCGATTCCATCACCTCGTCCTAC
GCCGCCGAAGGCCAGGCTGTCCCGAATCCCGCAATGGCTCCCCCGGGGGC
TTACCCTCCTCCATTTGGCTTCCCTGGCCGACCAGGTCAACTCCCTCCAC
CTCCCTTTGGAATGCCTCCTCTGGGCGCACCCGGCGCACCGGGCATGCCT
CCTCCCCCCGGAGCAAGAGGTCTCCCCTTTCCACCTCCCTTCCCCGGTCC
AGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCTCTCCCCAACATGCCCC
CCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGGATTCCCTCCGAACTTC
CCGACCCCTCCCCCTGGTGCTGCTGCTGCCGGGTTCCCCCCCATCCCTCC
CCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGTCCTACGCCCGGTATAG
CTGGACCGCCGGGACAGGATGGTGGTTACGCACCACCGCCCGGTATGGGC
GCCGGTTTGCCTGGTCCGCCTCCGGGATTGGGTGACAAGCGGTAAATGAG
CGTGCGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACGTGCTGG
AATACTACCAACAAATCGGACAAGAAAAGGCCCAATCGGTCATCGATTCC
ATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCCCGAATCCCGCAAT
GGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGCTTCCCTGGCCGACCAG
GTCAACTCCCTCCACCTCCCTTTGGAATGCCTCCTCTGGGCGCACCCGGC
GCACCGGGCATGCCTCCTCCCCCCGGAGCAAGAGGTCTCCCCTTTCCACC
TCCCTTCCCCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCTC
TCCCCAACATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGGA
TTCCCTCCGAACTTCCCGACCCCTCCCCCTGGTGCTGCTGCTGCCGGGTT
CCCCCCCATCCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGTC
CTACGCCCGGTATAGCTGGACCGCCGGGACAGGATGGTGGTTACGCACCA
CCGCCCGGTATGGGCGCCGGTTTGCCTGGTCCGCCTCCGGGATTGGGTGA
CAAGCGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_16040ATCC64974_16040Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16040-T1.exon1ATCC64974_16040-T1.exon1Aspergillus niger N402exon
ATCC64974_16040-T1.exon2ATCC64974_16040-T1.exon2Aspergillus niger N402exon
ATCC64974_16040-T1.exon3ATCC64974_16040-T1.exon3Aspergillus niger N402exon
ATCC64974_16040-T1.exon4ATCC64974_16040-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16040-T1.cdsATCC64974_16040-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16040-T1ATCC64974_16040-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR017340
DBxrefInterPro:IPR013085
DBxrefPFAM:PF06220
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:1461150..1461960 +
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