You are here

Home

ATCC64974_16550-T1, ATCC64974_16550-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_16550-T1
Unique NameATCC64974_16550-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:1627753..1629304+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_16550-T1 ID=ATCC64974_16550-T1|Name=ATCC64974_16550-T1|organism=Aspergillus niger N402|type=mRNA|length=1552bp|location=Sequence derived from alignment at OGUI01000003.1:1627753..1629304+ (Aspergillus niger N402)
ATGGATCAGCACGACGACTTCGACAGCGTCTCGTGGAGGCATGACCCGGA
CAGCGATCTCTCGCGACCCACGACCTCCGGAACAGACACAGAGGAACAGG
CGCCATACACTCACGATGTCAATGGCAAACGGAGGATGAGCAACGCTCAA
GAAAGCCCTCAGGCTGGACCACTGGCGGATGCCGTCGACCTGGCGGGCAT
CGGCGACGGCGTACTAGAGTGTCGGGTAGATTCACCGTTGAAGGAGAATG
ATGGAACGAAAGACGCTTATATCTCCTATTTGGTTACAACTACGGTGGGT
TATCTTTACCTTCAGTGATCTCAGATGGAAAAGGCTGTGCGGTTGCAGTG
CATGCTGACTAGAATGATAGACCGATTTCAAGTCCTTCCAGAAACCCGAG
TTCACCGTGCGACGCAGATTCACCGACTTCTACTTCCTATACAAGACACT
TTATCGCGAATACCCTGCCTGCGCCGTCCCGCCGCTGCCGGATAAGCATA
AGATGGAGTATGTCCGCGGCGATCGGTTCGGACCCGAATTCACTACCCGG
CGAGCATGGTCTTTACATCGCTTTTTGAAACGGCTTACGCTGCATCCCGT
GCTTCGTCGCGCACCGTTACTGGCCATCTTCCTGGAATCGCCCGACTGGA
ATGCACACATGCGGTTGCGGTCCACGCGCAACTCGACCAGCACCTCGGAC
GGCAGCGGGGTCCCTGGGATCTTTGACAACTTTACCGACACCTTTGTCAA
CGCTTTCACCAAGGTGCATAAGCCGGATAAGCGGTTTATTGAAGTGCGGG
AGAAGGCCGATAAACTGGACGAGGACCTCAATCATGTGGAGAAGATTGTA
GCCCGAGTGGCTCGGCGGGAATCGGATCTTGAGGCAGACTATAATGACCT
GGCTACGCAGTTCCGCAAACTTGTACCCCTGGAACCGGAGGTGGAGGTGC
CCCTACAAGTCTTTGCGGCCTCGGTAGAGGAGACGGGGCGCGGGCTCAAG
ACGCTCAAGGATCACACTGACCAGAATTATCTGGGGTCGCTGCGGGATAT
GGAGGCGTACATTGTCTCGCTTAAAGCCCTCCTCAAAACGCGCGAGCAGA
AACAGCTCGACTTCGAAGCGCTGGTTGACTATCGAAACAAGGCGGTGGCG
GAGCGGGACTCCCTCGCCTCTAACCCCTCGTCCTACTATGCCTCCAACCC
GCTGACCTCGTCCCCGGCCTCGTTCATCCGGTCCAAGATGGAGGACATGC
GGGGCGTCGACCACGAGCAGTCGCGACGCGAGAGGGTGCGGAAGTTGGAG
CTTCGCATTGACGAGCTCACGCGCGAGGTCGAATCGGCTAAAACGACGTC
GGAGATGTTCGACGAGGAAGTCGTGCGCGAGGTGGCAGACTTTGAGCGCA
TCAAGGCCGTAGAGTTCCGGGATACGCTGGGAGCGTTGGCCGAGAAGCAG
ATCGAGTTCTACCAGGGGGTACTGAATACCTGGGAACGATTTGTGGCTGA
GATGGAGGGAGATCTGGAAGAAGAGCATGACCCAGGCACGGAGGCCAGGT
GA
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:1627753..1629304+

>ATCC64974_16550-T1 ID=ATCC64974_16550-T1|Name=ATCC64974_16550-T1|organism=Aspergillus niger N402|type=CDS|length=2952bp|location=Sequence derived from alignment at OGUI01000003.1:1627753..1629304+ (Aspergillus niger N402)
ATGGATCAGCACGACGACTTCGACAGCGTCTCGTGGAGGCATGACCCGGA
CAGCGATCTCTCGCGACCCACGACCTCCGGAACAGACACAGAGGAACAGG
CGCCATACACTCACGATGTCAATGGCAAACGGAGGATGAGCAACGCTCAA
GAAAGCCCTCAGGCTGGACCACTGGCGGATGCCGTCGACCTGGCGGGCAT
CGGCGACGGCGTACTAGAGTGTCGGGTAGATTCACCGTTGAAGGAGAATG
ATGGAACGAAAGACGCTTATATCTCCTATTTGGTTACAACTACGACCGAT
TTCAAGTCCTTCCAGAAACCCGAGTTCACCGTGCGACGCAGATTCACCGA
CTTCTACTTCCTATACAAGACACTTTATCGCGAATACCCTGCCTGCGCCG
TCCCGCCGCTGCCGGATAAGCATAAGATGGAGTATGTCCGCGGCGATCGG
TTCGGACCCGAATTCACTACCCGGCGAGCATGGTCTTTACATCGCTTTTT
GAAACGGCTTACGCTGCATCCCGTGCTTCGTCGCGCACCGTTACTGGCCA
TCTTCCTGGAATCGCCCGACTGGAATGCACACATGCGGTTGCGGTCCACG
CGCAACTCGACCAGCACCTCGGACGGCAGCGGGGTCCCTGGGATCTTTGA
CAACTTTACCGACACCTTTGTCAACGCTTTCACCAAGGTGCATAAGCCGG
ATAAGCGGTTTATTGAAGTGCGGGAGAAGGCCGATAAACTGGACGAGGAC
CTCAATCATGTGGAGAAGATTGTAGCCCGAGTGGCTCGGCGGGAATCGGA
TCTTGAGGCAGACTATAATGACCTGGCTACGCAGTTCCGCAAACTTGTAC
CCCTGGAACCGGAGGTGGAGGTGCCCCTACAAGTCTTTGCGGCCTCGGTA
GAGGAGACGGGGCGCGGGCTCAAGACGCTCAAGGATCACACTGACCAGAA
TTATCTGGGGTCGCTGCGGGATATGGAGGCGTACATTGTCTCGCTTAAAG
CCCTCCTCAAAACGCGCGAGCAGAAACAGCTCGACTTCGAAGCGCTGGTT
GACTATCGAAACAAGGCGGTGGCGGAGCGGGACTCCCTCGCCTCTAACCC
CTCGTCCTACTATGCCTCCAACCCGCTGACCTCGTCCCCGGCCTCGTTCA
TCCGGTCCAAGATGGAGGACATGCGGGGCGTCGACCACGAGCAGTCGCGA
CGCGAGAGGGTGCGGAAGTTGGAGCTTCGCATTGACGAGCTCACGCGCGA
GGTCGAATCGGCTAAAACGACGTCGGAGATGTTCGACGAGGAAGTCGTGC
GCGAGGTGGCAGACTTTGAGCGCATCAAGGCCGTAGAGTTCCGGGATACG
CTGGGAGCGTTGGCCGAGAAGCAGATCGAGTTCTACCAGGGGGTACTGAA
TACCTGGGAACGATTTGTGGCTGAGATGGAGGGAGATCTGGAAGAAGAGC
ATGACCCAGGCACGGAGGCCAGGTGAATGGATCAGCACGACGACTTCGAC
AGCGTCTCGTGGAGGCATGACCCGGACAGCGATCTCTCGCGACCCACGAC
CTCCGGAACAGACACAGAGGAACAGGCGCCATACACTCACGATGTCAATG
GCAAACGGAGGATGAGCAACGCTCAAGAAAGCCCTCAGGCTGGACCACTG
GCGGATGCCGTCGACCTGGCGGGCATCGGCGACGGCGTACTAGAGTGTCG
GGTAGATTCACCGTTGAAGGAGAATGATGGAACGAAAGACGCTTATATCT
CCTATTTGGTTACAACTACGACCGATTTCAAGTCCTTCCAGAAACCCGAG
TTCACCGTGCGACGCAGATTCACCGACTTCTACTTCCTATACAAGACACT
TTATCGCGAATACCCTGCCTGCGCCGTCCCGCCGCTGCCGGATAAGCATA
AGATGGAGTATGTCCGCGGCGATCGGTTCGGACCCGAATTCACTACCCGG
CGAGCATGGTCTTTACATCGCTTTTTGAAACGGCTTACGCTGCATCCCGT
GCTTCGTCGCGCACCGTTACTGGCCATCTTCCTGGAATCGCCCGACTGGA
ATGCACACATGCGGTTGCGGTCCACGCGCAACTCGACCAGCACCTCGGAC
GGCAGCGGGGTCCCTGGGATCTTTGACAACTTTACCGACACCTTTGTCAA
CGCTTTCACCAAGGTGCATAAGCCGGATAAGCGGTTTATTGAAGTGCGGG
AGAAGGCCGATAAACTGGACGAGGACCTCAATCATGTGGAGAAGATTGTA
GCCCGAGTGGCTCGGCGGGAATCGGATCTTGAGGCAGACTATAATGACCT
GGCTACGCAGTTCCGCAAACTTGTACCCCTGGAACCGGAGGTGGAGGTGC
CCCTACAAGTCTTTGCGGCCTCGGTAGAGGAGACGGGGCGCGGGCTCAAG
ACGCTCAAGGATCACACTGACCAGAATTATCTGGGGTCGCTGCGGGATAT
GGAGGCGTACATTGTCTCGCTTAAAGCCCTCCTCAAAACGCGCGAGCAGA
AACAGCTCGACTTCGAAGCGCTGGTTGACTATCGAAACAAGGCGGTGGCG
GAGCGGGACTCCCTCGCCTCTAACCCCTCGTCCTACTATGCCTCCAACCC
GCTGACCTCGTCCCCGGCCTCGTTCATCCGGTCCAAGATGGAGGACATGC
GGGGCGTCGACCACGAGCAGTCGCGACGCGAGAGGGTGCGGAAGTTGGAG
CTTCGCATTGACGAGCTCACGCGCGAGGTCGAATCGGCTAAAACGACGTC
GGAGATGTTCGACGAGGAAGTCGTGCGCGAGGTGGCAGACTTTGAGCGCA
TCAAGGCCGTAGAGTTCCGGGATACGCTGGGAGCGTTGGCCGAGAAGCAG
ATCGAGTTCTACCAGGGGGTACTGAATACCTGGGAACGATTTGTGGCTGA
GATGGAGGGAGATCTGGAAGAAGAGCATGACCCAGGCACGGAGGCCAGGT
GA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNX4ATCC64974_16550Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16550-T1.exon1ATCC64974_16550-T1.exon1Aspergillus niger N402exon
ATCC64974_16550-T1.exon2ATCC64974_16550-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16550-T1.cdsATCC64974_16550-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_16550-T1ATCC64974_16550-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09261PNZ
DBxrefInterPro:IPR027267
DBxrefInterPro:IPR036871
DBxrefInterPro:IPR015404
DBxrefInterPro:IPR001683
DBxrefPFAM:PF09325
DBxrefPFAM:PF00787
Productintercellular trafficking and secretion
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:1627753..1629304 +
Powered by Drupal