You are here

Home

ATCC64974_17600-T1, ATCC64974_17600-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_17600-T1
Unique NameATCC64974_17600-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:1929401..1930177-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_17600-T1 ID=ATCC64974_17600-T1|Name=ATCC64974_17600-T1|organism=Aspergillus niger N402|type=mRNA|length=777bp|location=Sequence derived from alignment at OGUI01000003.1:1929401..1930177- (Aspergillus niger N402)
ATGGATTACCAGGTAAGCACAATTATATTCTTTATATACAGACCACATTA
CTAACAAAACCCCCCTAAACAGAACCGCGCCGGTTCCAAATTTGGCGGCG
GCGGCGTCGCCTCCCACTCCGCAACGAACGCCGACCGACGCGAACGCCTC
CGCAAACTGGCCCTGGAAACGATCGACCTCGACAAAGACCCCTACTTCTT
CAAGAACCACGTCGGCAGCTTCGAATGCAGACTATGTCTCACAGTGCACC
AAAACGACGGGTCCTACCTAGCGCACACGCAGGGGCGGAAACATCAAACG
AACCTTGCGCGGCGCGCGGCGCGCGAACAGCGCGAGGGCAAGAACCAAGA
CCCGTCGTCCATTCCCGGGGCGATGGGCGTGCAGGTCAAGAAGCAGACGA
TCAAGATCGGACGGCCGGGGTACAAGATCACGAAGATTCGGGATCCGTTG
ACGAGACAGCTGGGCATGTTGTTCCAGTTGCAGTATCAGGAGATTACGCC
GGGGGTTACGCCTAAGGTGCGGTTTATGTCGGCGTTTGAGCAGAAGGTGG
AGGAGCCGCCGGACAAGAACTTTCAGTATTTGGTTGTTGCGGCGGAGCCG
TATCAGACTTGTGGGTTTAAGTTGCAGGCGAGGGAGATTGATCGGCGCGA
GGGACGGTATTGGACTTGGTTTGATGAGGATAGTAAGGAGTTTTGGGTCC
AGATTATGTTCAAGACGGAGAGAGAGGAGAGGTTCTCGGGTGTGCCGGGG
TTGGCGCCTATTGAAAATAAGGCTTGA
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:1929401..1930177-

>ATCC64974_17600-T1 ID=ATCC64974_17600-T1|Name=ATCC64974_17600-T1|organism=Aspergillus niger N402|type=CDS|length=1434bp|location=Sequence derived from alignment at OGUI01000003.1:1929401..1930177- (Aspergillus niger N402)
AACCGCGCCGGTTCCAAATTTGGCGGCGGCGGCGTCGCCTCCCACTCCGC
AACGAACGCCGACCGACGCGAACGCCTCCGCAAACTGGCCCTGGAAACGA
TCGACCTCGACAAAGACCCCTACTTCTTCAAGAACCACGTCGGCAGCTTC
GAATGCAGACTATGTCTCACAGTGCACCAAAACGACGGGTCCTACCTAGC
GCACACGCAGGGGCGGAAACATCAAACGAACCTTGCGCGGCGCGCGGCGC
GCGAACAGCGCGAGGGCAAGAACCAAGACCCGTCGTCCATTCCCGGGGCG
ATGGGCGTGCAGGTCAAGAAGCAGACGATCAAGATCGGACGGCCGGGGTA
CAAGATCACGAAGATTCGGGATCCGTTGACGAGACAGCTGGGCATGTTGT
TCCAGTTGCAGTATCAGGAGATTACGCCGGGGGTTACGCCTAAGGTGCGG
TTTATGTCGGCGTTTGAGCAGAAGGTGGAGGAGCCGCCGGACAAGAACTT
TCAGTATTTGGTTGTTGCGGCGGAGCCGTATCAGACTTGTGGGTTTAAGT
TGCAGGCGAGGGAGATTGATCGGCGCGAGGGACGGTATTGGACTTGGTTT
GATGAGGATAGTAAGGAGTTTTGGGTCCAGATTATGTTCAAGACGGAGAG
AGAGGAGAGGTTCTCGGGTGTGCCGGGGTTGGCGCCTATTGAAAATAAGG
CTTGAATGGATTACCAGAACCGCGCCGGTTCCAAATTTGGCGGCGGCGGC
GTCGCCTCCCACTCCGCAACGAACGCCGACCGACGCGAACGCCTCCGCAA
ACTGGCCCTGGAAACGATCGACCTCGACAAAGACCCCTACTTCTTCAAGA
ACCACGTCGGCAGCTTCGAATGCAGACTATGTCTCACAGTGCACCAAAAC
GACGGGTCCTACCTAGCGCACACGCAGGGGCGGAAACATCAAACGAACCT
TGCGCGGCGCGCGGCGCGCGAACAGCGCGAGGGCAAGAACCAAGACCCGT
CGTCCATTCCCGGGGCGATGGGCGTGCAGGTCAAGAAGCAGACGATCAAG
ATCGGACGGCCGGGGTACAAGATCACGAAGATTCGGGATCCGTTGACGAG
ACAGCTGGGCATGTTGTTCCAGTTGCAGTATCAGGAGATTACGCCGGGGG
TTACGCCTAAGGTGCGGTTTATGTCGGCGTTTGAGCAGAAGGTGGAGGAG
CCGCCGGACAAGAACTTTCAGTATTTGGTTGTTGCGGCGGAGCCGTATCA
GACTTGTGGGTTTAAGTTGCAGGCGAGGGAGATTGATCGGCGCGAGGGAC
GGTATTGGACTTGGTTTGATGAGGATAGTAAGGAGTTTTGGGTCCAGATT
ATGTTCAAGACGGAGAGAGAGGAGAGGTTCTCGGGTGTGCCGGGGTTGGC
GCCTATTGAAAATAAGGCTTGAATGGATTACCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_17600ATCC64974_17600Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_17600-T1ATCC64974_17600-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_17600-T1.cdsATCC64974_17600-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_17600-T1.exon2ATCC64974_17600-T1.exon2Aspergillus niger N402exon
ATCC64974_17600-T1.exon1ATCC64974_17600-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092653YS
DBxrefInterPro:IPR000690
DBxrefInterPro:IPR031781
DBxrefInterPro:IPR003604
DBxrefPFAM:PF12874
DBxrefPFAM:PF16835
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:1929401..1930177 -
Powered by Drupal