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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000003.1:2187234..2187818+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_18460-T1 ID=ATCC64974_18460-T1|Name=ATCC64974_18460-T1|organism=Aspergillus niger N402|type=mRNA|length=585bp|location=Sequence derived from alignment at OGUI01000003.1:2187234..2187818+ (Aspergillus niger N402)
ATGGTAAGCTTTCCCCTAGTTGATATCATGCATGCACGTATTCTTACCAA
TACCTCCTTACTGCTATAGGCTCCTACTCGCTCGATCAAGAAGCCTGCAA
GTGGGAAAGGCGCTCTGCCCTCGTCTAAGCCCAGCTTTCTCCACGATGAG
TTTCGCACGACGAAGAAGGACAAGCGCTTGATTAAGCACAGCAGCTTTGT
GTCCAGGATAGAAAAGAACTCCCAGAAATCTACAAAGCGCCGGCGTGCCT
CCAAGAAACTTGCTGCTCTGGACTCATTGGCCGATGCGCTTCCGGACGCC
GACGATGCTGCTACCGACCCTAGCAAACAGGTTAATATCATCAAGCAGAA
AACTCTGCAGCATAGGCCAGGTGCTATGAAGCGTCGAGAGAAGCTAGAAC
GGCTGGAGCGCGATCGGTTTGCGAAGAATATGGCGCAGATGTCCAGCATG
CAAGCACCAGCGCCAACCACTACAGACTCCAACAGCAACACGGATGGGGG
CTCGGTTTCCAATCGATGGGCGGCCCTGCGGAACTTCATATCTCAAACTA
TGGAGCAGCAGCCTGCCTTCAAATCAAGCAGCTAG back to topCoding sequence (CDS) from alignment at OGUI01000003.1:2187234..2187818+ >ATCC64974_18460-T1 ID=ATCC64974_18460-T1|Name=ATCC64974_18460-T1|organism=Aspergillus niger N402|type=CDS|length=1038bp|location=Sequence derived from alignment at OGUI01000003.1:2187234..2187818+ (Aspergillus niger N402)
ATGGCTCCTACTCGCTCGATCAAGAAGCCTGCAAGTGGGAAAGGCGCTCT
GCCCTCGTCTAAGCCCAGCTTTCTCCACGATGAGTTTCGCACGACGAAGA
AGGACAAGCGCTTGATTAAGCACAGCAGCTTTGTGTCCAGGATAGAAAAG
AACTCCCAGAAATCTACAAAGCGCCGGCGTGCCTCCAAGAAACTTGCTGC
TCTGGACTCATTGGCCGATGCGCTTCCGGACGCCGACGATGCTGCTACCG
ACCCTAGCAAACAGGTTAATATCATCAAGCAGAAAACTCTGCAGCATAGG
CCAGGTGCTATGAAGCGTCGAGAGAAGCTAGAACGGCTGGAGCGCGATCG
GTTTGCGAAGAATATGGCGCAGATGTCCAGCATGCAAGCACCAGCGCCAA
CCACTACAGACTCCAACAGCAACACGGATGGGGGCTCGGTTTCCAATCGA
TGGGCGGCCCTGCGGAACTTCATATCTCAAACTATGGAGCAGCAGCCTGC
CTTCAAATCAAGCAGCTAGATGGCTCCTACTCGCTCGATCAAGAAGCCTG
CAAGTGGGAAAGGCGCTCTGCCCTCGTCTAAGCCCAGCTTTCTCCACGAT
GAGTTTCGCACGACGAAGAAGGACAAGCGCTTGATTAAGCACAGCAGCTT
TGTGTCCAGGATAGAAAAGAACTCCCAGAAATCTACAAAGCGCCGGCGTG
CCTCCAAGAAACTTGCTGCTCTGGACTCATTGGCCGATGCGCTTCCGGAC
GCCGACGATGCTGCTACCGACCCTAGCAAACAGGTTAATATCATCAAGCA
GAAAACTCTGCAGCATAGGCCAGGTGCTATGAAGCGTCGAGAGAAGCTAG
AACGGCTGGAGCGCGATCGGTTTGCGAAGAATATGGCGCAGATGTCCAGC
ATGCAAGCACCAGCGCCAACCACTACAGACTCCAACAGCAACACGGATGG
GGGCTCGGTTTCCAATCGATGGGCGGCCCTGCGGAACTTCATATCTCAAA
CTATGGAGCAGCAGCCTGCCTTCAAATCAAGCAGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030688 | preribosome, small subunit precursor |
| GO:0005730 | nucleolus |
| GO:0030686 | 90S preribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_18460-T1 | ATCC64974_18460-T1-protein | Aspergillus niger N402 | polypeptide |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR028160 |
| DBxref | PFAM:PF15341 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000003.1 | supercontig | OGUI01000003.1:2187234..2187818 + |
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